Matthieu Jules

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Pôles et Equipes
Pôle "Microbiologie des Systèmes et de Synthèse"
Systems Biology for bacterial Engineering and Redesign / Matthieu Jules
Membres SyBER
Matthieu Jules
Matthieu Jules

Matthieu Jules

Liste de publications

* Equal contributors, $ Corresponding authors

  1. Gauvry E, Mathot AG, Couvert O, Leguérinel I, Jules M, Coroller L. 2019. Differentiation of vegetative cells into spores: a kinetic model applied to Bacillus subtilis. Appl Environ Microbiol. Mar 22. pii: AEM.00322-19.
  2. Jules M. 2017. The logics of metabolic regulation in bacteria challenges biosensor-based metabolic engineering. Microb Cell. Dec 11;5(1):56-59
  3. Charbonnier T, Le Coq D, McGovern S, Calabre M, Delumeau O, Aymerich S, Jules M. 2017. Molecular and Physiological Logics of the Pyruvate-Induced Response of a Novel Transporter in Bacillus subtilis. MBio. Oct 3;8(5). pii: e00976-17.
  4. Guiziou S., Sauveplane V., Chang H.J., Clerté C., Declerck N., Jules M., Bonnet J. 2016. A part toolbox to tune genetic expression in Bacillus subtilis. Nucleic Acids Res. Sep 6;44(15):7495-508
  5. Borkowski O., Goelzer A., Schaffer M., Calabre M., Mäder U., Aymerich S., Jules M.$ and Fromion V. $. 2016. Translation elicits a growth-rate-dependent, genome-wide, differential protein production in Bacillus subtilis. Mol Syst Biol; 12:870.
  6. Goelzer A., Muntel J., Chubukov V., Jules M., Prestel E., Nölker R., Mariadassou M., Aymerich A., Hecker M., Noirot P., Becher D. and Fromion V. 2015. Quantitative prediction of genome-wide resource allocation in bacteria. Metab Eng ;32:232-43.
  7. Chubukov V., Uhr M., Le Chat L., Kleijn RJ., Jules M., Link H., Aymerich S., Stelling J. and Sauer U. 2013. Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis. Mol Syst Biol; 9:709.
  8. Edwards R. L., Bryan A., Jules M., Harada K., Buchrieser C. and Swanson M. S. 2013. Nicotinic Acid Modulates Legionella pneumophila Gene Expression and Induces Virulence Traits. Infect Immun; 81:945-955.
  9. Aichaoui L., Jules M., Le Chat L., Aymerich S., Fromion V. and Goelzer A. 2012. BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array. Bioinformatics; 28:2705-2706.
  10. Buescher J.M.*, Liebermeister W.*, Jules M.*, Uhr M.*, Muntel J.*, Botella E., Hessling B., Kleijn R.J., Le Chat L., Lecointe F., Mäder U., Nicolas P., Piersma S., Ruegheimer F., Becher D., Bessieres P., Bidnenko E., Denham E.L., Dervyn E., Devine K.M., Doherty G., Felicori L., Fogg M., Goelzer A., Hansen A., Harwood C.R., Hecker M., Hubner S., Hultschig C., Jarmer H., Klipp E., Leduc A., Lewis P., Molina F., Noirot P., Peres S., Piegeonneau N., Pohl S., Rasmussen S., Rinn B., Schaffer M., Schnidder J., Schwikowski B., van Dijl J.M., Veiga P., Walsh S., Wilkinson A.J., Stelling J., Aymerich S. and Sauer U. 2012. Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism. Science;335(6072):1099-103.
  11. Nicolas P., Mäder U., Dervyn E., Rochat T., Leduc A., Pigeonneau N., Bidnenko E., Marchadier E., Hoebeke M., Aymerich S., Becher D., Bisicchia P., Botella E., Delumeau O., Doherty G., Denham E.L., Devine K.M., Fogg M., Fromion V., Goelzer A., Hansen A., Härtig E., Harwood C.R., Homuth G., Jarmer H., Jules M., Klipp E., Le Chat L., Lecointe F., Lewis P., Liebermeister W., March A., Mars R.A.T., Nannapaneni P., Noone D., Pohl S., Rinn B., Rügheimer F., Sappa P.K., Samson F., Schaffer M., Schwikowski B., Steil L., Stülke J., Wiegert T., Wilkinson A.J., van Dijl J.M., Hecker M., Völker U., Bessières P. and Noirot P. 2012. Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis. Science;335(6072):1103-6.
  12. Ferguson M.L., Le Coq D., Jules M., Aymerich S., Radulescu o., Declerck N. and Royer C.A. 2011. Reconciling molecular regulatory mechanisms with noise patterns of bacterial metabolic promoters in induced and repressed states. Proc Natl Acad Sci USA; 109(1):155-60.
  13. Meyer F.M.*, Jules M.*, Mehne F.M.P.*, Le Coq D.*, Landmann J.J., Görke B., Aymerich S. and Stülke J. 2011. Malate-mediated carbon catabolite repression in Bacillus subtilis involves the HPrK/CcpA pathway. J. Bacteriology;193(24):6939-49.
  14. Ferguson M.L., Le Coq D., Jules M., Aymerich S., Declerck N. and Royer C.A. 2011. Absolute quantification of gene expression in individual bacterial cells using two-photon fluctuation microscopy. Anal Biochem.; 419(2):250-9.
  15. Herrmann V., Eidner A., Rydzewski K., Blädel I., Jules M., Buchrieser C., Eisenreich W. and Heuner K. 2011. GamA is a eukaryotic-like glucoamylase responsible for glycogen- and starch-degrading activity of Legionella pneumophila. Int J Med Microbiol.; 301(2):133-9.
  16. Eylert E., Herrmann V., Jules M., Gillmaier N., Lautner M., Buchrieser C., Eisenreich W. and Heuner K. 2010. Isotopologue profiling of Legionella pneumophila: The role of serine and glucose as carbon substrates. J. Biol. Chem.; 285(29):22232-43.
  17. Lomma M., Dervins-Ravault D., Rolando M., Nora T., Newton H., Samson F., Sahr T., Gomez-Valero L., Jules M., Hartland E. and Buchrieser C. 2010.The Legionella pneumophila F-box protein Lpp2082 (AnkB) modulates ubiquitination of the host protein parvin B and promotes intracellular replication. Cellular Microbiology; 12(9):1272-91.
  18. Botella E.*, Fogg M.*, Jules M.*, Piersma S.*, Doherty G., Hansen A., Denham E.L., Le Chat L., Veiga P., Bailey K., Lewis P.J., van Dijl J.M., Aymerich S., Wilkinson A.J. and Devine K.M. 2010. pBaSysBioII: an integrative plasmid generating gfp transcriptional fusions for high-throughput analysis of gene expression in Bacillus subtilis. Microbiology; 156(6):1600-8.
  19.  Edwards R.L., Jules M., Sahr T., Buchrieser C. and Swanson M.S. 2010. The Legionella pneumophila LetA/LetS two-component system exhibits rheostat-like behavior. Infect. Immun.; 78(6):2571-83.
  20. Kleijn R.J., Buescher J.M., Le Chat L., Jules M., Aymerich S. and Sauer U. 2010. Metabolic fluxes during strong carbon catabolite repression by malate in Bacillus subtilis. J. Biol. Chem.; 285(3):1587-96.
  21. Sahr T.*, Brüggemann H.*, Jules M.*, Lomma M., Albert-Weissenberg C., Cazalet C. and Buchrieser C. 2009. Two small ncRNAs jointly govern virulence and transmission in Legionella pneumophila. Molecular Microbiology; 72(3):741-62.
  22. Jules M., Le Chat L., Aymerich S. and Le Coq D. 2009. The Bacillus subtilis ywjI (glpX) Gene Encodes a Class II Fructose-1 1, 6-Bisphosphatase, 2 Functionally Equivalent to the Class III Fbp Enzyme. J. Bacteriology; 191(9):3168-71.
  23. Jules M.*, Beltran G.*, François J. & Parrou J. L. 2008. New insights into trehalose metabolism by Saccharomyces cerevisiae: NTH2 encodes a functional cytosolic trehalase, and deletion of TPS1 reveals Ath1p-dependent trehalose mobilization. Appl Environ Microbiol.; 74(3):605-14.
  24. Jules M. & Buchrieser C. 2007. Legionella pneumophila adaptation to intracellular life and the host response: clues from genomics and transcriptomics. FEBS Letters; 581(15):2829-38.
  25. Brüggemann H., Hagman A., Jules M., Sismeiro O., Dillies M.A., Gouyette C., Kunst F., Steinert M., Heuner K., Coppée J.Y. and Buchrieser C. 2006. Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila. Cellular Microbiology; 8(8):1228-1240.
  26. Jules M., François J. and Parrou J.L. 2005. Autonomous oscillations in Saccharomyces cerevisiae during batch cultures on trehalose. FEBS Journal; 272(6):1490-500.
  27. Parrou J.L., Jules M., Beltran G. and François J. 2005. Acid trehalase in yeast and filamentous fungi: localization, regulation and physiological function. FEMS Yeast Research; Apr; 5(6-7):503-11.
  28. Jules M., Guillou V., François J. and Parrou J.L. 2004. Two distinct pathways for trehalose assimilation in the yeast Saccharomyces cerevisiae. Appl Environ Microbiol.; 70(5):2771-8.

Chapitre de Livre

  1. Cazalet C., Jules M. and Buchrieser C. 2008. Genomics and Transcriptomics of Legionella pneumophila: Insights into the Life Style of an Intracellular Pathogen. Chapter 7 in “Legionella Molecular Microbiology”. Edited by: Klaus Heuner and Michele Swanson. Published by: Caister Academic Press.

Charbonnier T, Le Coq D, McGovern S, Calabre M, Delumeau O, Aymerich S, Jules M.

Date de modification : 14 septembre 2023 | Date de création : 23 janvier 2020 | Rédaction : Matthieu Jules