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> Recent publications

 

1.

New insights into intestinal phages.

Sausset R, Petit MA, Gaboriau-Routhiau V, De Paepe M.

Mucosal Immunol. 2020 Jan 6. doi: 10.1038/s41385-019-0250-5. [Epub ahead of print] Review.

PMID: 31907364 [PubMed - as supplied by publisher]

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2.

Assessing the quality of fresh Whitemouth croaker (Micropogonias furnieri) meat based on microorganism and histamine analysis using NGS, qPCR and HPLC-DAD.

Danile de Lira A, Isabel Kothe C, Rué O, Midoux C, Bertoni Mann M, Peixoto Mallmann L, Maia Santos de Castro Í, Frazzon APG, Frazzon J.

J Appl Microbiol. 2019 Dec 28. doi: 10.1111/jam.14566. [Epub ahead of print]

PMID: 31883415 [PubMed - as supplied by publisher]

Similar articles

 

3.

Gut microbiome alterations in anti-NMDA receptor encephalitis: caveats for result interpretation.

Berzero G, Psimaras D, Weiss N, Sokol H, Alentorn A.

Ann Clin Transl Neurol. 2020 Jan;7(1):153-154. doi: 10.1002/acn3.50970. Epub 2019 Dec 27. No abstract available.

PMID: 31880105 [PubMed - in process] Free PMC Article

Similar articles

 

4.

Processing TIRF Microscopy Images to Characterize the Dynamics and Morphology of Bacterial Actin-Like Assemblies.

Billaudeau C, Chastanet A, Carballido-López R.

Methods Mol Biol. 2020;2101:135-145. doi: 10.1007/978-1-0716-0219-5_9.

PMID: 31879902 [PubMed - in process]

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5.

Methods for Studying Membrane-Associated Bacterial Cytoskeleton Proteins In Vivo by TIRF Microscopy.

Cornilleau C, Chastanet A, Billaudeau C, Carballido-López R.

Methods Mol Biol. 2020;2101:123-133. doi: 10.1007/978-1-0716-0219-5_8.

PMID: 31879901 [PubMed - in process]

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6.

Permissive Fatty Acid Incorporation Promotes Staphylococcal Adaptation to FASII Antibiotics in Host Environments.

Kénanian G, Morvan C, Weckel A, Pathania A, Anba-Mondoloni J, Halpern D, Gaillard M, Solgadi A, Dupont L, Henry C, Poyart C, Fouet A, Lamberet G, Gloux K, Gruss A.

Cell Rep. 2019 Dec 17;29(12):3974-3982.e4. doi: 10.1016/j.celrep.2019.11.071.

PMID: 31851927 [PubMed - in process] Free Article

Similar articles

 

7.

The role of microbiota in tissue repair and regeneration.

Shavandi A, Saeedi P, Gérard P, Jalalvandi E, Cannella D, Bekhit AE.

J Tissue Eng Regen Med. 2019 Dec 16. doi: 10.1002/term.3009. [Epub ahead of print]

PMID: 31845514 [PubMed - as supplied by publisher]

Similar articles

 

8.

Emergence of a Synergistic Diversity as a Response to Competition in Pseudomonas putida Biofilms.

Bridier A, Piard JC, Briandet R, Bouchez T.

Microb Ecol. 2019 Dec 16. doi: 10.1007/s00248-019-01470-z. [Epub ahead of print]

PMID: 31844910 [PubMed - as supplied by publisher]

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9.

Reinforcement Learning for Bioretrosynthesis.

Koch M, Duigou T, Faulon JL.

ACS Synth Biol. 2019 Dec 30. doi: 10.1021/acssynbio.9b00447. [Epub ahead of print]

PMID: 31841626 [PubMed - as supplied by publisher]

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10.

Stool for fecal microbiota transplantation should be classified as a transplant product and not as a drug.

Keller JJ, Vehreschild MJ, Hvas CL, Jørgensen SM, Kupciskas J, Link A, Mulder CJ, Goldenberg SD, Arasaradnam R, Sokol H, Gasbarrini A, Hoegenauer C, Terveer EM, Kuijper EJ, Arkkila P; UEG working group of the Standards and Guidelines initiative Stool banking for FMT.

United European Gastroenterol J. 2019 Dec;7(10):1408-1410. doi: 10.1177/2050640619887579. Epub 2019 Nov 14. No abstract available.

PMID: 31839966 [PubMed - in process] Free PMC Article

Similar articles

 

11.

The enemy from within: a prophage of Roseburia intestinalis systematically turns lytic in the mouse gut, driving bacterial adaptation by CRISPR spacer acquisition.

Cornuault JK, Moncaut E, Loux V, Mathieu A, Sokol H, Petit MA, De Paepe M.

ISME J. 2019 Dec 11. doi: 10.1038/s41396-019-0566-x. [Epub ahead of print]

PMID: 31827247 [PubMed - as supplied by publisher]

Similar articles

 

12.

Intracellular offspring released from SFB filaments are flagellated.

Nkamba I, Mulet C, Dubey GP, Gorgette O, Couesnon A, Salles A, Moya-Nilges M, Jung V, Gaboriau-Routhiau V, Guerrera IC, Shima T, Umesaki Y, Nigro G, Krijnse-Locker J, Bérard M, Cerf-Bensussan N, Sansonetti PJ, Schnupf P.

Nat Microbiol. 2020 Jan;5(1):34-39. doi: 10.1038/s41564-019-0608-1. Epub 2019 Dec 9.

PMID: 31819216 [PubMed - in process]

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13.

Bacillus subtilis regulators MntR and Zur participate in redox cycling, antibiotic sensitivity, and cell wall plasticity.

Randazzo P, Anba-Mondoloni J, Aubert-Frambourg A, Guillot A, Pechoux C, Vidic J, Auger S.

J Bacteriol. 2019 Dec 9. pii: JB.00547-19. doi: 10.1128/JB.00547-19. [Epub ahead of print]

PMID: 31818924 [PubMed - as supplied by publisher]

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14.

Fecal microbiome as determinant of the effect of diet on colorectal cancer risk: comparison of meat-based versus pesco-vegetarian diets (the MeaTIc study).

Sofi F, Dinu M, Pagliai G, Pierre F, Gueraud F, Bowman J, Gerard P, Longo V, Giovannelli L, Caderni G, de Filippo C.

Trials. 2019 Dec 9;20(1):688. doi: 10.1186/s13063-019-3801-x.

PMID: 31815647 [PubMed - in process] Free PMC Article

Similar articles

 

15.

Dr. NO and Mr. Toxic - the versatile role of nitric oxide.

Tran SL, Porrini C, Ramarao N.

Biol Chem. 2019 Dec 1. pii: /j/bchm.just-accepted/hsz-2019-0368/hsz-2019-0368.xml. doi: 10.1515/hsz-2019-0368. [Epub ahead of print]

PMID: 31811798 [PubMed - as supplied by publisher]

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16.

Standardized IMGT® Nomenclature of Salmonidae IGH Genes, the Paradigm of Atlantic Salmon and Rainbow Trout: From Genomics to Repertoires.

Magadan S, Krasnov A, Hadi-Saljoqi S, Afanasyev S, Mondot S, Lallias D, Castro R, Salinas I, Sunyer O, Hansen J, Koop BF, Lefranc MP, Boudinot P.

Front Immunol. 2019 Nov 12;10:2541. doi: 10.3389/fimmu.2019.02541. eCollection 2019.

PMID: 31798572 [PubMed - in process] Free PMC Article

Similar articles

 

17.

The stationary phase regulator CpcR activates cry gene expression in non-sporulating cells of Bacillus thuringiensis.

Zhang R, Slamti L, Tong L, Verplaetse E, Ma L, Lemy C, Peng Q, Guo S, Zhang J, Song F, Lereclus D.

Mol Microbiol. 2019 Dec 2. doi: 10.1111/mmi.14439. [Epub ahead of print]

PMID: 31793098 [PubMed - as supplied by publisher]

Similar articles

 

18.

Probiotic Properties of Lactobacillus Strains Isolated from Table Olive Biofilms.

Benítez-Cabello A, Torres-Maravilla E, Bermúdez-Humarán L, Langella P, Martín R, Jiménez-Díaz R, Arroyo-López FN.

Probiotics Antimicrob Proteins. 2019 Dec 1. doi: 10.1007/s12602-019-09604-y. [Epub ahead of print]

PMID: 31788768 [PubMed - as supplied by publisher]

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19.

The intestinal microbiota regulates host cholesterol homeostasis.

Le Roy T, Lécuyer E, Chassaing B, Rhimi M, Lhomme M, Boudebbouze S, Ichou F, Haro Barceló J, Huby T, Guerin M, Giral P, Maguin E, Kapel N, Gérard P, Clément K, Lesnik P.

BMC Biol. 2019 Nov 27;17(1):94. doi: 10.1186/s12915-019-0715-8.

PMID: 31775890 [PubMed - in process] Free PMC Article

Similar articles

 

20.

Risk factors for the carriage of Streptococcus infantarius subspecies infantarius isolated from African fermented dairy products.

Gboko KDT, Traoré SG, Sanhoun AR, Kirioua J, Otaru N, Kurt F, Jaeger FN, Isenring J, Kaindi DWM, Kreikemeyer B, Renault P, Hattendorf J, Meile L, Jans C, Nguetta R, Bonfoh B.

PLoS One. 2019 Nov 27;14(11):e0225452. doi: 10.1371/journal.pone.0225452. eCollection 2019.

PMID: 31774832 [PubMed - in process] Free PMC Article

Similar articles

 

21.

Steatosis and gut microbiota dysbiosis induced by high-fat diet are reversed by 1-week chow diet administration.

Safari Z, Monnoye M, Abuja PM, Mariadassou M, Kashofer K, Gérard P, Zatloukal K.

Nutr Res. 2019 Nov;71:72-88. doi: 10.1016/j.nutres.2019.09.004. Epub 2019 Oct 23.

PMID: 31757631 [PubMed - in process]

Similar articles

 

22.

Enterococcus faecalis MalR acts as a repressor of the maltose operons and additionally mediates their catabolite repression via direct interaction with seryl-phosphorylated-HPr.

Grand M, Blancato VS, Espariz M, Deutscher J, Pikis A, Hartke A, Magni C, Sauvageot N.

Mol Microbiol. 2019 Nov 22. doi: 10.1111/mmi.14431. [Epub ahead of print]

PMID: 31755602 [PubMed - as supplied by publisher]

Similar articles

 

23.

Iron deficiency and anemia in adolescent girls consuming predominantly plant-based diets in rural Ethiopia.

Seyoum Y, Humblot C, Nicolas G, Thomas M, Baye K.

Sci Rep. 2019 Nov 21;9(1):17244. doi: 10.1038/s41598-019-53836-5.

PMID: 31754277 [PubMed - in process] Free PMC Article

Similar articles

 

24.

Blp1 protein shows virulence-associated features and elicits protective immunity to Acinetobacter baumannii infection.

Skerniškytė J, Karazijaitė E, Deschamps J, Krasauskas R, Armalytė J, Briandet R, Sužiedėlienė E.

BMC Microbiol. 2019 Nov 21;19(1):259. doi: 10.1186/s12866-019-1615-3.

PMID: 31752683 [PubMed - in process] Free PMC Article

Similar articles

 

25.

In Yarrowia lipolytica erythritol catabolism ends with erythrose phosphate.

Niang PM, Arguelles-Arias A, Steels S, Denies O, Nicaud JM, Fickers P.

Cell Biol Int. 2019 Nov 21. doi: 10.1002/cbin.11265. [Epub ahead of print]

PMID: 31750586 [PubMed - as supplied by publisher]

Similar articles

 

26.

[Criteria to indicate kidney biopsy in type 2 diabetic patients with proteinuria: Survey among French nephrologists].

Chemouny JM, Sannier A, Hanouna G, Raimbourg Q, Daugas É, Vigneau C, Vrtovnsik F.

Nephrol Ther. 2019 Dec;15(7):524-531. doi: 10.1016/j.nephro.2019.05.004. Epub 2019 Nov 9. French.

PMID: 31718993 [PubMed - in process]

Similar articles

 

27.

Colorectal cancer-associated microbiota contributes to oncogenic epigenetic signatures.

Sobhani I, Bergsten E, Couffin S, Amiot A, Nebbad B, Barau C, de'Angelis N, Rabot S, Canoui-Poitrine F, Mestivier D, Pédron T, Khazaie K, Sansonetti PJ.

Proc Natl Acad Sci U S A. 2019 Nov 26;116(48):24285-24295. doi: 10.1073/pnas.1912129116. Epub 2019 Nov 11.

PMID: 31712445 [PubMed - in process]

Similar articles

 

28.

Sildenafil citrate long-term treatment effects on cardiovascular reactivity in a SHR experimental model of metabolic syndrome.

Doghri Y, Chetaneau F, Rhimi M, Kriaa A, Lalanne V, Thorin C, Maguin E, Mallem MY, Desfontis JC.

PLoS One. 2019 Nov 7;14(11):e0223914. doi: 10.1371/journal.pone.0223914. eCollection 2019.

PMID: 31697707 [PubMed - in process] Free PMC Article

Similar articles

 

29.

Fermentation innovation through complex hybridization of wild and domesticated yeasts.

Langdon QK, Peris D, Baker EP, Opulente DA, Nguyen HV, Bond U, Gonçalves P, Sampaio JP, Libkind D, Hittinger CT.

Nat Ecol Evol. 2019 Nov;3(11):1576-1586. doi: 10.1038/s41559-019-0998-8. Epub 2019 Oct 21.

PMID: 31636426 [PubMed - indexed for MEDLINE]

Similar articles

 

30.

Efficient expression vectors and host strain for the production of recombinant proteins by Yarrowia lipolytica in process conditions.

Park YK, Vandermies M, Soudier P, Telek S, Thomas S, Nicaud JM, Fickers P.

Microb Cell Fact. 2019 Oct 10;18(1):167. doi: 10.1186/s12934-019-1218-6.

PMID: 31601223 [PubMed - in process] Free PMC Article

Similar articles

 

31.

A dual-chain assembly pathway generates the high structural diversity of cell-wall polysaccharides in  Lactococcus lactis .

Theodorou I, Courtin P, Palussière S, Kulakauskas S, Bidnenko E, Péchoux C, Fenaille F, Penno C, Mahony J, van Sinderen D, Chapot-Chartier MP.

J Biol Chem. 2019 Nov 15;294(46):17612-17625. doi: 10.1074/jbc.RA119.009957. Epub 2019 Oct 3.

PMID: 31582566 [PubMed - in process]

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32.

HpaP Sequesters HrpJ, an Essential Component of  Ralstonia solanacearum  Virulence That Triggers Necrosis in  Arabidopsis .

Lonjon F, Rengel D, Roux F, Henry C, Turner M, Le Ru A, Razavi N, Sabbagh CRR, Genin S, Vailleau F.

Mol Plant Microbe Interact. 2019 Dec 16:MPMI05190139R. doi: 10.1094/MPMI-05-19-0139-R. [Epub ahead of print]

PMID: 31567040 [PubMed - as supplied by publisher]

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33.

Toxicity profiling and prioritization of plant-derived antimalarial agents.

Devillers J, Devillers H.

SAR QSAR Environ Res. 2019 Nov;30(11):801-824. doi: 10.1080/1062936X.2019.1665844. Epub 2019 Sep 30.

PMID: 31565973 [PubMed - indexed for MEDLINE]

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34.

Characterization and Whole Genome Sequencing of AR23, a Highly Toxic Bacillus thuringiensis Strain Isolated from Lebanese Soil.

Fayad N, Patiño-Navarrete R, Kambris Z, Antoun M, Osta M, Chopineau J, Mahillon J, El Chamy L, Sanchis V, Kallassy Awad M.

Curr Microbiol. 2019 Dec;76(12):1503-1511. doi: 10.1007/s00284-019-01775-9. Epub 2019 Sep 28.

PMID: 31563972 [PubMed - in process]

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35.

International consensus conference on stool banking for faecal microbiota transplantation in clinical practice.

Cammarota G, Ianiro G, Kelly CR, Mullish BH, Allegretti JR, Kassam Z, Putignani L, Fischer M, Keller JJ, Costello SP, Sokol H, Kump P, Satokari R, Kahn SA, Kao D, Arkkila P, Kuijper EJ, Vehreschild MJG, Pintus C, Lopetuso L, Masucci L, Scaldaferri F, Terveer EM, Nieuwdorp M, López-Sanromán A, Kupcinskas J, Hart A, Tilg H, Gasbarrini A.

Gut. 2019 Dec;68(12):2111-2121. doi: 10.1136/gutjnl-2019-319548. Epub 2019 Sep 28. Review.

PMID: 31563878 [PubMed - indexed for MEDLINE] Free PMC Article

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36.

High-throughput detection and tracking of cells and intracellular spots in mother machine experiments.

Ollion J, Elez M, Robert L.

Nat Protoc. 2019 Nov;14(11):3144-3161. doi: 10.1038/s41596-019-0216-9. Epub 2019 Sep 25.

PMID: 31554957 [PubMed - in process]

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37.

Real-time visualization of mutations and their fitness effects in single bacteria.

Robert L, Ollion J, Elez M.

Nat Protoc. 2019 Nov;14(11):3126-3143. doi: 10.1038/s41596-019-0215-x. Epub 2019 Sep 25.

PMID: 31554956 [PubMed - in process]

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38.

The Architecture of Monospecific Microalgae Biofilms.

Fanesi A, Paule A, Bernard O, Briandet R, Lopes F.

Microorganisms. 2019 Sep 13;7(9). pii: E352. doi: 10.3390/microorganisms7090352.

PMID: 31540235 [PubMed] Free PMC Article

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39.

Α de novo 3.8-Mb inversion affecting the EDA and XIST genes in a heterozygous female calf with generalized hypohidrotic ectodermal dysplasia.

Escouflaire C, Rebours E, Charles M, Orellana S, Cano M, Rivière J, Grohs C, Hayes H, Capitan A.

BMC Genomics. 2019 Sep 18;20(1):715. doi: 10.1186/s12864-019-6087-1.

PMID: 31533624 [PubMed - in process] Free PMC Article

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40.

Serine protease inhibitors and human wellbeing interplay: new insights for old friends.

Mkaouar H, Akermi N, Kriaa A, Abraham AL, Jablaoui A, Soussou S, Mokdad-Gargouri R, Maguin E, Rhimi M.

PeerJ. 2019 Aug 30;7:e7224. doi: 10.7717/peerj.7224. eCollection 2019.

PMID: 31531264 [PubMed] Free PMC Article

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41.

Characterization of the gen locus involved in β-1,6-oligosaccharide utilization by Enterococcus faecalis.

Grand M, Aubourg M, Pikis A, Thompson J, Deutscher J, Hartke A, Sauvageot N.

Mol Microbiol. 2019 Dec;112(6):1744-1756. doi: 10.1111/mmi.14390. Epub 2019 Oct 14.

PMID: 31529727 [PubMed - in process]

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42.

Identification of telomerase RNAs in species of the Yarrowia clade provides insights into the co-evolution of telomerase, telomeric repeats and telomere-binding proteins.

Červenák F, Juríková K, Devillers H, Kaffe B, Khatib A, Bonnell E, Sopkovičová M, Wellinger RJ, Nosek J, Tzfati Y, Neuvéglise C, Tomáška Ľ.

Sci Rep. 2019 Sep 16;9(1):13365. doi: 10.1038/s41598-019-49628-6.

PMID: 31527614 [PubMed - in process] Free PMC Article

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43.

A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.

Scepanovic P, Hodel F, Mondot S, Partula V, Byrd A, Hammer C, Alanio C, Bergstedt J, Patin E, Touvier M, Lantz O, Albert ML, Duffy D, Quintana-Murci L, Fellay J; Milieu Intérieur Consortium.

Microbiome. 2019 Sep 13;7(1):130. doi: 10.1186/s40168-019-0747-x.

PMID: 31519223 [PubMed - in process] Free PMC Article

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44.

Overexpression of diacylglycerol acetyltransferase from Euonymus europaeus in Yarrowia lipolytica leads to the production of single-cell oil enriched with 3-acetyl-1,2-diacylglycerols.

Gajdoš P, Hambalko J, Nicaud JM, Čertík M.

Yeast. 2019 Sep 11. doi: 10.1002/yea.3442. [Epub ahead of print]

PMID: 31509617 [PubMed - as supplied by publisher]

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45.

Editorial: Next-Generation Probiotics: From Commensal Bacteria to Novel Drugs and Food Supplements.

Langella P, Guarner F, Martín R.

Front Microbiol. 2019 Aug 27;10:1973. doi: 10.3389/fmicb.2019.01973. eCollection 2019. No abstract available.

PMID: 31507575 [PubMed] Free PMC Article

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46.

Viral metagenomic analysis of the cheese surface: A comparative study of rapid procedures for extracting viral particles.

Dugat-Bony E, Lossouarn J, De Paepe M, Sarthou AS, Fedala Y, Petit MA, Chaillou S.

Food Microbiol. 2020 Feb;85:103278. doi: 10.1016/j.fm.2019.103278. Epub 2019 Jul 24.

PMID: 31500705 [PubMed - indexed for MEDLINE]

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47.

Microbial metabolites control the thymic development of mucosal-associated invariant T cells.

Legoux F, Bellet D, Daviaud C, El Morr Y, Darbois A, Niort K, Procopio E, Salou M, Gilet J, Ryffel B, Balvay A, Foussier A, Sarkis M, El Marjou A, Schmidt F, Rabot S, Lantz O.

Science. 2019 Oct 25;366(6464):494-499. doi: 10.1126/science.aaw2719. Epub 2019 Aug 29.

PMID: 31467190 [PubMed - in process]

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48.

Metabolic perceptrons for neural computing in biological systems.

Pandi A, Koch M, Voyvodic PL, Soudier P, Bonnet J, Kushwaha M, Faulon JL.

Nat Commun. 2019 Aug 28;10(1):3880. doi: 10.1038/s41467-019-11889-0.

PMID: 31462649 [PubMed - indexed for MEDLINE] Free PMC Article

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49.

The commensal Escherichia coli CEC15 reinforces intestinal defences in gnotobiotic mice and is protective in a chronic colitis mouse model.

Escribano-Vazquez U, Verstraeten S, Martin R, Chain F, Langella P, Thomas M, Cherbuy C.

Sci Rep. 2019 Aug 7;9(1):11431. doi: 10.1038/s41598-019-47611-9.

PMID: 31391483 [PubMed - in process] Free PMC Article

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50.

Activity evaluation of pure and doped zinc oxide nanoparticles against bacterial pathogens and Saccharomyces cerevisiae.

Zanet V, Vidic J, Auger S, Vizzini P, Lippe G, Iacumin L, Comi G, Manzano M.

J Appl Microbiol. 2019 Nov;127(5):1391-1402. doi: 10.1111/jam.14407. Epub 2019 Sep 2.

PMID: 31386785 [PubMed - indexed for MEDLINE]

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51.

Specific changes in faecal microbiota are associated with familial Mediterranean fever.

Deshayes S, Fellahi S, Bastard JP, Launay JM, Callebert J, Fraisse T, Buob D, Boffa JJ, Giurgea I, Dupont C, Jegou S, Straube M, Karras A, Aouba A, Grateau G, Sokol H, Georgin-Lavialle S; AA Amyloidosis Study Group; AA amyloidosis Study Group.

Ann Rheum Dis. 2019 Oct;78(10):1398-1404. doi: 10.1136/annrheumdis-2019-215258. Epub 2019 Aug 3.

PMID: 31377728 [PubMed - in process]

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52.

The oligopeptide ABC-importers are essential communication channels in Gram-positive bacteria.

Slamti L, Lereclus D.

Res Microbiol. 2019 Nov - Dec;170(8):338-344. doi: 10.1016/j.resmic.2019.07.004. Epub 2019 Aug 1. Review.

PMID: 31376485 [PubMed - indexed for MEDLINE]

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53.

Baseline microbiota composition modulates antibiotic-mediated effects on the gut microbiota and host.

Lavelle A, Hoffmann TW, Pham HP, Langella P, Guédon E, Sokol H.

Microbiome. 2019 Aug 2;7(1):111. doi: 10.1186/s40168-019-0725-3.

PMID: 31375137 [PubMed - in process] Free PMC Article

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54.

Mucosal healing progression after acute colitis in mice.

Vidal-Lletjós S, Andriamihaja M, Blais A, Grauso M, Lepage P, Davila AM, Gaudichon C, Leclerc M, Blachier F, Lan A.

World J Gastroenterol. 2019 Jul 21;25(27):3572-3589. doi: 10.3748/wjg.v25.i27.3572.

PMID: 31367158 [PubMed - in process] Free PMC Article

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55.

Electrochemical and Optical Biosensors for the Detection of  Campylobacter  and  Listeria : An Update Look.

Vizzini P, Braidot M, Vidic J, Manzano M.

Micromachines (Basel). 2019 Jul 27;10(8). pii: E500. doi: 10.3390/mi10080500. Review.

PMID: 31357655 [PubMed] Free PMC Article

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56.

The T cell receptor (TRA) locus in the rabbit (Oryctolagus cuniculus): Genomic features and consequences for invariant T cells.

Mondot S, Lantz O, Lefranc MP, Boudinot P.

Eur J Immunol. 2019 Dec;49(12):2146-2158. doi: 10.1002/eji.201948228. Epub 2019 Aug 13.

PMID: 31355919 [PubMed - in process]

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57.

Two FtsH Proteases Contribute to Fitness and Adaptation of  Pseudomonas aeruginosa  Clone C Strains.

Kamal SM, Rybtke ML, Nimtz M, Sperlein S, Giske C, Trček J, Deschamps J, Briandet R, Dini L, Jänsch L, Tolker-Nielsen T, Lee C, Römling U.

Front Microbiol. 2019 Jul 9;10:1372. doi: 10.3389/fmicb.2019.01372. eCollection 2019.

PMID: 31338071 [PubMed] Free PMC Article

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58.

Rod width under control.

Carballido-López R.

Nat Microbiol. 2019 Aug;4(8):1246-1248. doi: 10.1038/s41564-019-0528-0. No abstract available.

PMID: 31337895 [PubMed - in process]

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59.

Ruminococcin C, an anti-clostridial sactipeptide produced by a prominent member of the human microbiota  Ruminococcus gnavus .

Balty C, Guillot A, Fradale L, Brewee C, Boulay M, Kubiak X, Benjdia A, Berteau O.

J Biol Chem. 2019 Oct 4;294(40):14512-14525. doi: 10.1074/jbc.RA119.009416. Epub 2019 Jul 23.

PMID: 31337708 [PubMed - in process] Free PMC Article

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60.

Optimizing Cell-Free Biosensors to Monitor Enzymatic Production.

Pandi A, Grigoras I, Borkowski O, Faulon JL.

ACS Synth Biol. 2019 Aug 16;8(8):1952-1957. doi: 10.1021/acssynbio.9b00160. Epub 2019 Aug 2.

PMID: 31335131 [PubMed - in process]

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61.

Oral delivery of pancreatitis-associated protein by Lactococcus lactis displays protective effects in dinitro-benzenesulfonic-acid-induced colitis model and is able to modulate the composition of the microbiota.

Breyner NM, Vilas Boas PB, Fernandes G, de Carvalho RD, Rochat T, Michel ML, Chain F, Sokol H, de Azevedo M, Myioshi A, Azevedo VA, Langella P, Bermúdez-Humarán LG, Chatel JM.

Environ Microbiol. 2019 Nov;21(11):4020-4031. doi: 10.1111/1462-2920.14748. Epub 2019 Sep 10.

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62.

Exploring the impact of Mg-doped ZnO nanoparticles on a model soil microorganism Bacillus subtilis.

Auger S, Henry C, Péchaux C, Lejal N, Zanet V, Nikolic MV, Manzano M, Vidic J.

Ecotoxicol Environ Saf. 2019 Oct 30;182:109421. doi: 10.1016/j.ecoenv.2019.109421. Epub 2019 Jul 10.

PMID: 31301592 [PubMed - indexed for MEDLINE]

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63.

Genetics of Lactococci.

Gaudu P, Yamamoto Y, Jensen PR, Hammer K, Lechardeur D, Gruss A.

Microbiol Spectr. 2019 Jul;7(4). doi: 10.1128/microbiolspec.GPP3-0035-2018.

PMID: 31298208 [PubMed - in process]

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64.

Screening a genomic library for genes involved in propionate tolerance in Yarrowia lipolytica.

Park YK, Nicaud JM.

Yeast. 2019 Jul 10. doi: 10.1002/yea.3431. [Epub ahead of print]

PMID: 31293017 [PubMed - as supplied by publisher]

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65.

Fitness Restoration of a Genetically Tractable Enterococcus faecalis V583 Derivative To Study Decoration-Related Phenotypes of the Enterococcal Polysaccharide Antigen.

Furlan S, Matos RC, Kennedy SP, Doublet B, Serror P, Rigottier-Gois L.

mSphere. 2019 Jul 10;4(4). pii: e00310-19. doi: 10.1128/mSphere.00310-19.

PMID: 31292230 [PubMed - in process] Free PMC Article

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66.

Temperature-responsive extraction of violacein using a tuneable anionic surfactant-based system.

Schaeffer N, Kholany M, Veloso TLM, Pereira JL, Ventura SPM, Nicaud JM, Coutinho JAP.

Chem Commun (Camb). 2019 Jul 18;55(59):8643-8646. doi: 10.1039/c9cc03831k.

PMID: 31286132 [PubMed]

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67.

para-Sulphonato-calix[n]arene capped silver nanoparticles challenge the catalytic efficiency and the stability of a novel human gut serine protease inhibitor.

Akermi N, Mkaouar H, Kriaa A, Jablaoui A, Soussou S, Gargouri A, Coleman AW, Perret F, Maguin E, Rhimi M.

Chem Commun (Camb). 2019 Aug 7;55(61):8935-8938. doi: 10.1039/c9cc03183a. Epub 2019 Jul 9.

PMID: 31286126 [PubMed - indexed for MEDLINE]

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68.

Identification of Hanks-Type Kinase PknB-Specific Targets in the Streptococcus thermophilus  Phosphoproteome.

Henry C, Haller L, Blein-Nicolas M, Zivy M, Canette A, Verbrugghe M, Mézange C, Boulay M, Gardan R, Samson S, Martin V, André-Leroux G, Monnet V.

Front Microbiol. 2019 Jun 19;10:1329. doi: 10.3389/fmicb.2019.01329. eCollection 2019.

PMID: 31275266 [PubMed] Free PMC Article

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69.

Investigating Host Microbiota Relationships Through Functional Metagenomics.

Laville E, Perrier J, Bejar N, Maresca M, Esque J, Tauzin AS, Bouhajja E, Leclerc M, Drula E, Henrissat B, Berdah S, Di Pasquale E, Robe P, Potocki-Veronese G.

Front Microbiol. 2019 Jun 7;10:1286. doi: 10.3389/fmicb.2019.01286. eCollection 2019.

PMID: 31275257 [PubMed] Free PMC Article

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70.

Studies of the Listeria monocytogenes Cellobiose Transport Components and Their Impact on Virulence Gene Repression.

Cao TN, Joyet P, Aké FMD, Milohanic E, Deutscher J.

J Mol Microbiol Biotechnol. 2019 Jul 3:1-17. doi: 10.1159/000500090. [Epub ahead of print]

PMID: 31269503 [PubMed - as supplied by publisher]

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71.

Akkermansia muciniphila  abundance is lower in severe obesity, but its increased level after bariatric surgery is not associated with metabolic health improvement.

Dao MC, Belda E, Prifti E, Everard A, Kayser BD, Bouillot JL, Chevallier JM, Pons N, Le Chatelier E, Ehrlich SD, Doré J, Aron-Wisnewsky J, Zucker JD, Cani PD, Clément K.

Am J Physiol Endocrinol Metab. 2019 Sep 1;317(3):E446-E459. doi: 10.1152/ajpendo.00140.2019. Epub 2019 Jul 2.

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72.

Gut microbiota in PSC : From association to possible causality. Commentary to "Gut pathobionts underlie intestinal barrier dysfunction and liver T helper 17 cell immune response in primary sclerosing cholangitis" by Nakamoto et al., Nature Microbiology, January 2019.

Lemoinne S, Sabino J, Sokol H.

Clin Res Hepatol Gastroenterol. 2019 Jun 28. pii: S2210-7401(19)30130-5. doi: 10.1016/j.clinre.2019.06.005. [Epub ahead of print]

PMID: 31262571 [PubMed - as supplied by publisher]

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73.

Microbiota-gut brain axis involvement in neuropsychiatric disorders.

Iannone LF, Preda A, Blottière HM, Clarke G, Albani D, Belcastro V, Carotenuto M, Cattaneo A, Citraro R, Ferraris C, Ronchi F, Luongo G, Santocchi E, Guiducci L, Baldelli P, Iannetti P, Pedersen S, Petretto A, Provasi S, Selmer K, Spalice A, Tagliabue A, Verrotti A, Segata N, Zimmermann J, Minetti C, Mainardi P, Giordano C, Sisodiya S, Zara F, Russo E, Striano P.

Expert Rev Neurother. 2019 Oct;19(10):1037-1050. doi: 10.1080/14737175.2019.1638763. Epub 2019 Jul 11.

PMID: 31260640 [PubMed - in process]

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74.

Modulation of the Caecal Gut Microbiota of Mice by Dietary Supplement Containing Resistant Starch: Impact Is Donor-Dependent.

Cherbuy C, Bellet D, Robert V, Mayeur C, Schwiertz A, Langella P.

Front Microbiol. 2019 Jun 6;10:1234. doi: 10.3389/fmicb.2019.01234. eCollection 2019.

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75.

Elucidating the Hot Spot Residues of Quorum Sensing Peptidic Autoinducer PapR by Multiple Amino Acid Replacements.

Yehuda A, Slamti L, Malach E, Lereclus D, Hayouka Z.

Front Microbiol. 2019 Jun 7;10:1246. doi: 10.3389/fmicb.2019.01246. eCollection 2019.

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76.

Intestinal translocation of enterococci requires a threshold level of enterococcal overgrowth in the lumen.

Archambaud C, Derré-Bobillot A, Lapaque N, Rigottier-Gois L, Serror P.

Sci Rep. 2019 Jun 20;9(1):8926. doi: 10.1038/s41598-019-45441-3.

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77.

A Guide for Ex Vivo Handling and Storage of Stool Samples Intended for Fecal Microbiota Transplantation.

Burz SD, Abraham AL, Fonseca F, David O, Chapron A, Béguet-Crespel F, Cénard S, Le Roux K, Patrascu O, Levenez F, Schwintner C, Blottière HM, Béra-Maillet C, Lepage P, Doré J, Juste C.

Sci Rep. 2019 Jun 20;9(1):8897. doi: 10.1038/s41598-019-45173-4.

PMID: 31222022 [PubMed - in process] Free PMC Article

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78.

RocS drives chromosome segregation and nucleoid protection in Streptococcus pneumoniae.

Mercy C, Ducret A, Slager J, Lavergne JP, Freton C, Nagarajan SN, Garcia PS, Noirot-Gros MF, Dubarry N, Nourikyan J, Veening JW, Grangeasse C.

Nat Microbiol. 2019 Oct;4(10):1661-1670. doi: 10.1038/s41564-019-0472-z. Epub 2019 Jun 10.

PMID: 31182798 [PubMed - in process]

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79.

Emerging Health Concepts in the Probiotics Field: Streamlining the Definitions.

Martín R, Langella P.

Front Microbiol. 2019 May 21;10:1047. doi: 10.3389/fmicb.2019.01047. eCollection 2019. No abstract available.

PMID: 31164874 [PubMed] Free PMC Article

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80.

Size and Flexibility Define the Inhibition of the H3N2 Influenza Endonuclease Enzyme by Calix[n]arenes.

Tauran Y, Cerón-Carrasco JP, Rhimi M, Perret F, Kim B, Collard D, Coleman AW, Pérez-Sánchez H.

Antibiotics (Basel). 2019 Jun 3;8(2). pii: E73. doi: 10.3390/antibiotics8020073.

PMID: 31163674 [PubMed] Free PMC Article

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81.

Production and characterization of two medium-chain-length polydroxyalkanoates by engineered strains of Yarrowia lipolytica.

Rigouin C, Lajus S, Ocando C, Borsenberger V, Nicaud JM, Marty A, Avérous L, Bordes F.

Microb Cell Fact. 2019 May 31;18(1):99. doi: 10.1186/s12934-019-1140-y.

PMID: 31151440 [PubMed - indexed for MEDLINE] Free PMC Article

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82.

A modular Golden Gate toolkit for Yarrowia lipolytica synthetic biology.

Larroude M, Park YK, Soudier P, Kubiak M, Nicaud JM, Rossignol T.

Microb Biotechnol. 2019 Nov;12(6):1249-1259. doi: 10.1111/1751-7915.13427. Epub 2019 May 31.

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83.

Prominence of ileal mucosa-associated microbiota to predict postoperative endoscopic recurrence in Crohn's disease.

Sokol H, Brot L, Stefanescu C, Auzolle C, Barnich N, Buisson A, Fumery M, Pariente B, Le Bourhis L, Treton X, Nancey S, Allez M, Seksik P; REMIND Study Group Investigators.

Gut. 2019 May 29. pii: gutjnl-2019-318719. doi: 10.1136/gutjnl-2019-318719. [Epub ahead of print]

PMID: 31142586 [PubMed - as supplied by publisher]

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84.

Binding activity to intestinal cells and transient colonization in mice of two Lactobacillus paracasei subsp. paracasei strains with high aggregation potential.

Miljkovic M, Thomas M, Serror P, Rigottier-Gois L, Kojic M.

World J Microbiol Biotechnol. 2019 May 27;35(6):85. doi: 10.1007/s11274-019-2663-4.

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85.

Insights Into the Complexity of Yeast Extract Peptides and Their Utilization by  Streptococcus thermophilus .

Proust L, Sourabié A, Pedersen M, Besançon I, Haudebourg E, Monnet V, Juillard V.

Front Microbiol. 2019 Apr 30;10:906. doi: 10.3389/fmicb.2019.00906. eCollection 2019.

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86.

The Mutation of Conservative Asp268 Residue in the Peptidoglycan-Associated Domain of the OmpA Protein Affects Multiple  Acinetobacter baumannii  Virulence Characteristics.

Skerniškytė J, Karazijaitė E, Deschamps J, Krasauskas R, Briandet R, Sužiedėlienė E.

Molecules. 2019 May 22;24(10). pii: E1972. doi: 10.3390/molecules24101972.

PMID: 31121924 [PubMed - indexed for MEDLINE] Free PMC Article

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87.

Glutamate dehydrogenases in the oleaginous yeast Yarrowia lipolytica.

Trotter PJ, Juco K, Le HT, Nelson K, Tamayo LI, Nicaud JM, Park YK.

Yeast. 2019 May 22. doi: 10.1002/yea.3425. [Epub ahead of print]

PMID: 31119792 [PubMed - as supplied by publisher]

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88.

The  Bacillus cereus  Group:  Bacillus  Species with Pathogenic Potential.

Ehling-Schulz M, Lereclus D, Koehler TM.

Microbiol Spectr. 2019 May;7(3). doi: 10.1128/microbiolspec.GPP3-0032-2018.

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89.

Diversity of the Rap-Phr quorum-sensing systems in the Bacillus cereus group.

Cardoso PF, Perchat S, Vilas-Boas LA, Lereclus D, Vilas-Bôas GT.

Curr Genet. 2019 Dec;65(6):1367-1381. doi: 10.1007/s00294-019-00993-9. Epub 2019 May 18.

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90.

Microbial Genes for a Circular and Sustainable Bio-PET Economy.

Salvador M, Abdulmutalib U, Gonzalez J, Kim J, Smith AA, Faulon JL, Wei R, Zimmermann W, Jimenez JI.

Genes (Basel). 2019 May 16;10(5). pii: E373. doi: 10.3390/genes10050373. Review.

PMID: 31100963 [PubMed - in process] Free PMC Article

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91.

A microbiota-generated bile salt induces biofilm formation in  Clostridium difficile .

Dubois T, Tremblay YDN, Hamiot A, Martin-Verstraete I, Deschamps J, Monot M, Briandet R, Dupuy B.

NPJ Biofilms Microbiomes. 2019 May 9;5:14. doi: 10.1038/s41522-019-0087-4. eCollection 2019.

PMID: 31098293 [PubMed - in process] Free PMC Article

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92.

Recombinant invasive  Lactobacillus plantarum  expressing fibronectin binding protein A induce specific humoral immune response by stimulating differentiation of dendritic cells.

Liu J, Yang G, Gao X, Zhang Z, Liu Y, Liu Q, Chatel JM, Jiang Y, Wang C.

Benef Microbes. 2019 May 28;10(5):589-604. doi: 10.3920/BM2018.0157. Epub 2019 May 15.

PMID: 31088293 [PubMed - indexed for MEDLINE]

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93.

The Ser/Thr Kinase PrkC Participates in Cell Wall Homeostasis and Antimicrobial Resistance in Clostridium difficile.

Cuenot E, Garcia-Garcia T, Douche T, Gorgette O, Courtin P, Denis-Quanquin S, Hoys S, Tremblay YDN, Matondo M, Chapot-Chartier MP, Janoir C, Dupuy B, Candela T, Martin-Verstraete I.

Infect Immun. 2019 Jul 23;87(8). pii: e00005-19. doi: 10.1128/IAI.00005-19. Print 2019 Aug.

PMID: 31085703 [PubMed - indexed for MEDLINE] Free Article

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94.

Glyphosate and glyphosate-based herbicide exposure during the peripartum period affects maternal brain plasticity, maternal behaviour and microbiome.

Dechartres J, Pawluski JL, Gueguen MM, Jablaoui A, Maguin E, Rhimi M, Charlier TD.

J Neuroendocrinol. 2019 Sep;31(9):e12731. doi: 10.1111/jne.12731. Epub 2019 May 26.

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95.

Bacillus thuringiensis  Spores and Vegetative Bacteria: Infection Capacity and Role of the Virulence Regulon PlcR Following Intrahaemocoel Injection of  Galleria mellonella .

Buisson C, Gohar M, Huillet E, Nielsen-LeRoux C.

Insects. 2019 May 5;10(5). pii: E129. doi: 10.3390/insects10050129.

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96.

Associations between usual diet and gut microbiota composition: results from the Milieu Intérieur cross-sectional study.

Partula V, Mondot S, Torres MJ, Kesse-Guyot E, Deschasaux M, Assmann K, Latino-Martel P, Buscail C, Julia C, Galan P, Hercberg S, Rouilly V, Thomas S, Quintana-Murci L, Albert ML, Duffy D, Lantz O, Touvier M; Milieu Intérieur Consortium.

Am J Clin Nutr. 2019 May 1;109(5):1472-1483. doi: 10.1093/ajcn/nqz029.

PMID: 31051503 [PubMed - indexed for MEDLINE]

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97.

Decoration of the enterococcal polysaccharide antigen EPA is essential for virulence, cell surface charge and interaction with effectors of the innate immune system.

Smith RE, Salamaga B, Szkuta P, Hajdamowicz N, Prajsnar TK, Bulmer GS, Fontaine T, Kołodziejczyk J, Herry JM, Hounslow AM, Williamson MP, Serror P, Mesnage S.

PLoS Pathog. 2019 May 2;15(5):e1007730. doi: 10.1371/journal.ppat.1007730. eCollection 2019 May.

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98.

Gut bacteria are critical for optimal muscle function: a potential link with glucose homeostasis.

Nay K, Jollet M, Goustard B, Baati N, Vernus B, Pontones M, Lefeuvre-Orfila L, Bendavid C, Rué O, Mariadassou M, Bonnieu A, Ollendorff V, Lepage P, Derbré F, Koechlin-Ramonatxo C.

Am J Physiol Endocrinol Metab. 2019 Jul 1;317(1):E158-E171. doi: 10.1152/ajpendo.00521.2018. Epub 2019 Apr 30.

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99.

Large biodiversity of yeasts in French Guiana and the description of Suhomyces coccinellae f.a. sp. nov. and Suhomyces faveliae f.a. sp. nov.

Jacques N, Casaregola S.

Int J Syst Evol Microbiol. 2019 Jun;69(6):1634-1649. doi: 10.1099/ijsem.0.003369. Epub 2019 Apr 29.

PMID: 31033433 [PubMed - indexed for MEDLINE]

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100.

Distinct and Specific Role of NlpC/P60 Endopeptidases LytA and LytB in Cell Elongation and Division of  Lactobacillus plantarum .

Duchêne MC, Rolain T, Knoops A, Courtin P, Chapot-Chartier MP, Dufrêne YF, Hallet BF, Hols P.

Front Microbiol. 2019 Apr 12;10:713. doi: 10.3389/fmicb.2019.00713. eCollection 2019.

PMID: 31031721 [PubMed] Free PMC Article

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101.

The signaling peptide NprX controlling sporulation and necrotrophism is imported into Bacillus thuringiensis by two oligopeptide permease systems.

Dubois T, Lemy C, Perchat S, Lereclus D.

Mol Microbiol. 2019 Jul;112(1):219-232. doi: 10.1111/mmi.14264. Epub 2019 May 11.

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102.

From Probiotics to Psychobiotics: Live Beneficial Bacteria Which Act on the Brain-Gut Axis.

Bermúdez-Humarán LG, Salinas E, Ortiz GG, Ramirez-Jirano LJ, Morales JA, Bitzer-Quintero OK.

Nutrients. 2019 Apr 20;11(4). pii: E890. doi: 10.3390/nu11040890. Review.

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103.

Basophil involvement in lupus nephritis: a basis for innovation in daily care.

Charles N, Chemouny JM, Daugas E.

Nephrol Dial Transplant. 2019 May 1;34(5):750-756. doi: 10.1093/ndt/gfy245.

PMID: 31009949 [PubMed - in process]

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104.

Fungi participate in the dysbiosis of gut microbiota in patients with primary sclerosing cholangitis.

Lemoinne S, Kemgang A, Ben Belkacem K, Straube M, Jegou S, Corpechot C; Saint-Antoine IBD Network, Chazouillères O, Housset C, Sokol H.

Gut. 2020 Jan;69(1):92-102. doi: 10.1136/gutjnl-2018-317791. Epub 2019 Apr 19.

PMID: 31003979 [PubMed - indexed for MEDLINE] Free Article

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105.

Purification of tubulin with controlled post-translational modifications by polymerization-depolymerization cycles.

Souphron J, Bodakuntla S, Jijumon AS, Lakisic G, Gautreau AM, Janke C, Magiera MM.

Nat Protoc. 2019 May;14(5):1634-1660. doi: 10.1038/s41596-019-0153-7. Epub 2019 Apr 17.

PMID: 30996262 [PubMed - indexed for MEDLINE]

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106.

 Shigella  MreB promotes polar IcsA positioning for actin tail formation.

Krokowski S, Atwal S, Lobato-Márquez D, Chastanet A, Carballido-López R, Salje J, Mostowy S.

J Cell Sci. 2019 May 2;132(9). pii: jcs226217. doi: 10.1242/jcs.226217.

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107.

Plug-and-play metabolic transducers expand the chemical detection space of cell-free biosensors.

Voyvodic PL, Pandi A, Koch M, Conejero I, Valjent E, Courtet P, Renard E, Faulon JL, Bonnet J.

Nat Commun. 2019 Apr 12;10(1):1697. doi: 10.1038/s41467-019-09722-9.

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108.

Biofilm Formation and Synthesis of Antimicrobial Compounds by the Biocontrol Agent Bacillus velezensis QST713 in an  Agaricus bisporus  Compost Micromodel.

Pandin C, Darsonval M, Mayeur C, Le Coq D, Aymerich S, Briandet R.

Appl Environ Microbiol. 2019 May 30;85(12). pii: e00327-19. doi: 10.1128/AEM.00327-19. Print 2019 Jun 15.

PMID: 30979839 [PubMed - in process] Free PMC Article

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109.

Engineering Lactococcus lactis for the production of unusual anthocyanins using tea as substrate.

Solopova A, van Tilburg AY, Foito A, Allwood JW, Stewart D, Kulakauskas S, Kuipers OP.

Metab Eng. 2019 Jul;54:160-169. doi: 10.1016/j.ymben.2019.04.002. Epub 2019 Apr 10.

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110.

 Porphyromonas , a potential predictive biomarker of  Pseudomonas aeruginosa  pulmonary infection in cystic fibrosis.

Keravec M, Mounier J, Guilloux CA, Fangous MS, Mondot S, Vallet S, Gouriou S, Le Berre R, Rault G, Férec C, Barbier G, Lepage P, Héry-Arnaud G.

BMJ Open Respir Res. 2019 Mar 12;6(1):e000374. doi: 10.1136/bmjresp-2018-000374. eCollection 2019.

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111.

Fructose malabsorption induces cholecystokinin expression in the ileum and cecum by changing microbiota composition and metabolism.

Zhang X, Grosfeld A, Williams E, Vasiliauskas D, Barretto S, Smith L, Mariadassou M, Philippe C, Devime F, Melchior C, Gourcerol G, Dourmap N, Lapaque N, Larraufie P, Blottière HM, Herberden C, Gerard P, Rehfeld JF, Ferraris RP, Fritton JC, Ellero-Simatos S, Douard V.

FASEB J. 2019 Jun;33(6):7126-7142. doi: 10.1096/fj.201801526RR. Epub 2019 Apr 2.

PMID: 30939042 [PubMed - in process]

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112.

The potential probiotic Lactobacillus rhamnosus CNCM I-3690 strain protects the intestinal barrier by stimulating both mucus production and cytoprotective response.

Martín R, Chamignon C, Mhedbi-Hajri N, Chain F, Derrien M, Escribano-Vázquez U, Garault P, Cotillard A, Pham HP, Chervaux C, Bermúdez-Humarán LG, Smokvina T, Langella P.

Sci Rep. 2019 Apr 1;9(1):5398. doi: 10.1038/s41598-019-41738-5.

PMID: 30931953 [PubMed - in process] Free PMC Article

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113.

[Tryptophan and metabolic syndrome, a new challenge for health].

Agus A, Sokol H.

Med Sci (Paris). 2019 Mar;35(3):213-215. doi: 10.1051/medsci/2019040. Epub 2019 Apr 1. French. No abstract available.

PMID: 30931904 [PubMed - indexed for MEDLINE]

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114.

AA16, a new lytic polysaccharide monooxygenase family identified in fungal secretomes.

Filiatrault-Chastel C, Navarro D, Haon M, Grisel S, Herpoël-Gimbert I, Chevret D, Fanuel M, Henrissat B, Heiss-Blanquet S, Margeot A, Berrin JG.

Biotechnol Biofuels. 2019 Mar 16;12:55. doi: 10.1186/s13068-019-1394-y. eCollection 2019.

PMID: 30923563 [PubMed] Free PMC Article

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115.

Custom-made transcriptional biosensors for metabolic engineering.

Koch M, Pandi A, Borkowski O, Batista AC, Faulon JL.

Curr Opin Biotechnol. 2019 Oct;59:78-84. doi: 10.1016/j.copbio.2019.02.016. Epub 2019 Mar 25. Review.

PMID: 30921678 [PubMed - in process]

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116.

Alternative splicing events expand molecular diversity of camel CSN1S2 increasing its ability to generate potentially bioactive peptides.

Ryskaliyeva A, Henry C, Miranda G, Faye B, Konuspayeva G, Martin P.

Sci Rep. 2019 Mar 27;9(1):5243. doi: 10.1038/s41598-019-41649-5.

PMID: 30918277 [PubMed - in process] Free PMC Article

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117.

Differentiation of Vegetative Cells into Spores: a Kinetic Model Applied to Bacillus subtilis.

Gauvry E, Mathot AG, Couvert O, Leguérinel I, Jules M, Coroller L.

Appl Environ Microbiol. 2019 May 2;85(10). pii: e00322-19. doi: 10.1128/AEM.00322-19. Print 2019 May 15.

PMID: 30902849 [PubMed - in process] Free PMC Article

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118.

Control by Metals of Staphylopine Dehydrogenase Activity during Metallophore Biosynthesis.

Hajjar C, Fanelli R, Laffont C, Brutesco C, Cullia G, Tribout M, Nurizzo D, Borezée-Durant E, Voulhoux R, Pignol D, Lavergne J, Cavelier F, Arnoux P.

J Am Chem Soc. 2019 Apr 3;141(13):5555-5562. doi: 10.1021/jacs.9b01676. Epub 2019 Mar 22.

PMID: 30901200 [PubMed - in process]

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119.

Procyanidin-Cell Wall Interactions within Apple Matrices Decrease the Metabolization of Procyanidins by the Human Gut Microbiota and the Anti-Inflammatory Effect of the Resulting Microbial Metabolome In Vitro.

Le Bourvellec C, Bagano Vilas Boas P, Lepercq P, Comtet-Marre S, Auffret P, Ruiz P, Bott R, Renard CMGC, Dufour C, Chatel JM, Mosoni P.

Nutrients. 2019 Mar 19;11(3). pii: E664. doi: 10.3390/nu11030664.

PMID: 30893845 [PubMed - indexed for MEDLINE] Free PMC Article

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120.

Multi-hit early life adversity affects gut microbiota, brain and behavior in a sex-dependent manner.

Rincel M, Aubert P, Chevalier J, Grohard PA, Basso L, Monchaux de Oliveira C, Helbling JC, Lévy É, Chevalier G, Leboyer M, Eberl G, Layé S, Capuron L, Vergnolle N, Neunlist M, Boudin H, Lepage P, Darnaudéry M.

Brain Behav Immun. 2019 Aug;80:179-192. doi: 10.1016/j.bbi.2019.03.006. Epub 2019 Mar 11.

PMID: 30872090 [PubMed - in process]

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121.

Genetic diversity and population structure of Saccharomyces cerevisiae strains isolated from traditional alcoholic beverages of Côte d'Ivoire.

Tra Bi CY, Amoikon TLS, Kouakou CA, Noemie J, Lucas M, Grondin C, Legras JL, N'guessan FK, Djeni TN, Djè MK, Casaregola S.

Int J Food Microbiol. 2019 May 16;297:1-10. doi: 10.1016/j.ijfoodmicro.2019.03.001. Epub 2019 Mar 3.

PMID: 30852361 [PubMed - indexed for MEDLINE]

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122.

Genetic effects on the commensal microbiota in inflammatory bowel disease patients.

Aschard H, Laville V, Tchetgen ET, Knights D, Imhann F, Seksik P, Zaitlen N, Silverberg MS, Cosnes J, Weersma RK, Xavier R, Beaugerie L, Skurnik D, Sokol H.

PLoS Genet. 2019 Mar 8;15(3):e1008018. doi: 10.1371/journal.pgen.1008018. eCollection 2019 Mar.

PMID: 30849075 [PubMed - indexed for MEDLINE] Free PMC Article

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123.

Point-of-Need DNA Testing for Detection of Foodborne Pathogenic Bacteria.

Vidic J, Vizzini P, Manzano M, Kavanaugh D, Ramarao N, Zivkovic M, Radonic V, Knezevic N, Giouroudi I, Gadjanski I.

Sensors (Basel). 2019 Mar 4;19(5). pii: E1100. doi: 10.3390/s19051100. Review.

PMID: 30836707 [PubMed - indexed for MEDLINE] Free PMC Article

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124.

Fungal Species Diversity in French Bread Sourdoughs Made of Organic Wheat Flour.

Urien C, Legrand J, Montalent P, Casaregola S, Sicard D.

Front Microbiol. 2019 Feb 18;10:201. doi: 10.3389/fmicb.2019.00201. eCollection 2019.

PMID: 30833935 [PubMed] Free PMC Article

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125.

A Putative Type V Pilus Contributes to Bacteroides thetaiotaomicron Biofilm Formation Capacity.

Mihajlovic J, Bechon N, Ivanova C, Chain F, Almeida A, Langella P, Beloin C, Ghigo JM.

J Bacteriol. 2019 Aug 22;201(18). pii: e00650-18. doi: 10.1128/JB.00650-18. Print 2019 Sep 15.

PMID: 30833358 [PubMed - in process]

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126.

The gut mycobiota: insights into analysis, environmental interactions and role in gastrointestinal diseases.

Richard ML, Sokol H.

Nat Rev Gastroenterol Hepatol. 2019 Jun;16(6):331-345. doi: 10.1038/s41575-019-0121-2. Review.

PMID: 30824884 [PubMed - indexed for MEDLINE]

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127.

Dietary Protein Intake Level Modulates Mucosal Healing and Mucosa-Adherent Microbiota in Mouse Model of Colitis.

Vidal-Lletjós S, Andriamihaja M, Blais A, Grauso M, Lepage P, Davila AM, Viel R, Gaudichon C, Leclerc M, Blachier F, Lan A.

Nutrients. 2019 Feb 28;11(3). pii: E514. doi: 10.3390/nu11030514.

PMID: 30823387 [PubMed - indexed for MEDLINE] Free PMC Article

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128.

A Data Integration Multi-Omics Approach to Study Calorie Restriction-Induced Changes in Insulin Sensitivity.

Dao MC, Sokolovska N, Brazeilles R, Affeldt S, Pelloux V, Prifti E, Chilloux J, Verger EO, Kayser BD, Aron-Wisnewsky J, Ichou F, Pujos-Guillot E, Hoyles L, Juste C, Doré J, Dumas ME, Rizkalla SW, Holmes BA, Zucker JD, Clément K; MICRO-Obes Consortium.

Front Physiol. 2019 Feb 5;9:1958. doi: 10.3389/fphys.2018.01958. eCollection 2018.

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129.

Faecalibacterium prausnitzii Skews Human DC to Prime IL10-Producing T Cells Through TLR2/6/JNK Signaling and IL-10, IL-27, CD39, and IDO-1 Induction.

Alameddine J, Godefroy E, Papargyris L, Sarrabayrouse G, Tabiasco J, Bridonneau C, Yazdanbakhsh K, Sokol H, Altare F, Jotereau F.

Front Immunol. 2019 Feb 6;10:143. doi: 10.3389/fimmu.2019.00143. eCollection 2019.

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130.

Ferulic Acid and Eugenol Have Different Abilities to Maintain Their Inhibitory Activity Against  Listeria monocytogenes  in Emulsified Systems.

Pernin A, Bosc V, Maillard MN, Dubois-Brissonnet F.

Front Microbiol. 2019 Feb 6;10:137. doi: 10.3389/fmicb.2019.00137. eCollection 2019.

PMID: 30787916 [PubMed] Free PMC Article

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131.

Biophysical and structural characterization of a zinc-responsive repressor of the MarR superfamily.

Varela PF, Velours C, Aumont-Niçaise M, Pineau B, Legrand P, Poquet I.

PLoS One. 2019 Feb 12;14(2):e0210123. doi: 10.1371/journal.pone.0210123. eCollection 2019.

PMID: 30753183 [PubMed - indexed for MEDLINE] Free PMC Article

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132.

Bacterial NHEJ: a never ending story.

Bertrand C, Thibessard A, Bruand C, Lecointe F, Leblond P.

Mol Microbiol. 2019 May;111(5):1139-1151. doi: 10.1111/mmi.14218. Epub 2019 Mar 18. Review.

PMID: 30746801 [PubMed - in process]

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133.

Selection of Heterologous Protein-Producing Strains in Yarrowia lipolytica.

Soudier P, Larroude M, Celińska E, Rossignol T, Nicaud JM.

Methods Mol Biol. 2019;1923:153-168. doi: 10.1007/978-1-4939-9024-5_6. Review.

PMID: 30737739 [PubMed - indexed for MEDLINE]

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134.

Fecal microbiota transplantation before or after allogeneic hematopoietic transplantation in patients with hematologic malignancies carrying multidrug-resistance bacteria.

Battipaglia G, Malard F, Rubio MT, Ruggeri A, Mamez AC, Brissot E, Giannotti F, Dulery R, Joly AC, Baylatry MT, Kossmann MJ, Tankovic J, Beaugerie L, Sokol H, Mohty M.

Haematologica. 2019 Aug;104(8):1682-1688. doi: 10.3324/haematol.2018.198549. Epub 2019 Feb 7.

PMID: 30733264 [PubMed - in process] Free PMC Article

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135.

Anti-tumoral Effects of Recombinant  Lactococcus lactis  Strain Secreting IL-17A Cytokine.

Jacouton E, Torres Maravilla E, Boucard AS, Pouderous N, Pessoa Vilela AP, Naas I, Chain F, Azevedo V, Langella P, Bermúdez-Humarán LG.

Front Microbiol. 2019 Jan 23;9:3355. doi: 10.3389/fmicb.2018.03355. eCollection 2018.

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136.

Microbiota Sensing by Mincle-Syk Axis in Dendritic Cells Regulates Interleukin-17 and -22 Production and Promotes Intestinal Barrier Integrity.

Martínez-López M, Iborra S, Conde-Garrosa R, Mastrangelo A, Danne C, Mann ER, Reid DM, Gaboriau-Routhiau V, Chaparro M, Lorenzo MP, Minnerup L, Saz-Leal P, Slack E, Kemp B, Gisbert JP, Dzionek A, Robinson MJ, Rupérez FJ, Cerf-Bensussan N, Brown GD, Bernardo D, LeibundGut-Landmann S, Sancho D.

Immunity. 2019 Feb 19;50(2):446-461.e9. doi: 10.1016/j.immuni.2018.12.020. Epub 2019 Jan 29.

PMID: 30709742 [PubMed - indexed for MEDLINE] Free PMC Article

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137.

Inhibitory activity of phenolic acids against Listeria monocytogenes: Deciphering the mechanisms of action using three different models.

Pernin A, Guillier L, Dubois-Brissonnet F.

Food Microbiol. 2019 Jun;80:18-24. doi: 10.1016/j.fm.2018.12.010. Epub 2018 Dec 24.

PMID: 30704593 [PubMed - indexed for MEDLINE]

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138.

Genome Sequence of the Oleaginous Yeast Yarrowia lipolytica H222.

Devillers H, Neuvéglise C.

Microbiol Resour Announc. 2019 Jan 24;8(4). pii: e01547-18. doi: 10.1128/MRA.01547-18. eCollection 2019 Jan.

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139.

Exon junction complex components Y14 and Mago still play a role in budding yeast.

Boisramé A, Devillers H, Onésime D, Brunel F, Pouch J, Piot M, Neuvéglise C.

Sci Rep. 2019 Jan 29;9(1):849. doi: 10.1038/s41598-018-36785-3.

PMID: 30696855 [PubMed - in process] Free PMC Article

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140.

MreB Forms Subdiffraction Nanofilaments during Active Growth in Bacillus subtilis.

Billaudeau C, Yao Z, Cornilleau C, Carballido-López R, Chastanet A.

mBio. 2019 Jan 29;10(1). pii: e01879-18. doi: 10.1128/mBio.01879-18.

PMID: 30696741 [PubMed - indexed for MEDLINE] Free PMC Article

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141.

The main WAP isoform usually found in camel milk arises from the usage of an improbable intron cryptic splice site in the precursor to mRNA in which a GC-AG intron occurs.

Ryskaliyeva A, Henry C, Miranda G, Faye B, Konuspayeva G, Martin P.

BMC Genet. 2019 Jan 29;20(1):14. doi: 10.1186/s12863-018-0704-x.

PMID: 30696406 [PubMed - indexed for MEDLINE] Free PMC Article

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142.

Risk assessment of probiotics use requires clinical parameters.

Langella P, Chatel JM.

Nat Rev Gastroenterol Hepatol. 2019 Apr;16(4):202-204. doi: 10.1038/s41575-019-0111-4. No abstract available.

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143.

Elucidating the Immune-Related Mechanisms by Which Probiotic Strain  Lactobacillus casei  BL23 Displays Anti-tumoral Properties.

Jacouton E, Michel ML, Torres-Maravilla E, Chain F, Langella P, Bermúdez-Humarán LG.

Front Microbiol. 2019 Jan 11;9:3281. doi: 10.3389/fmicb.2018.03281. eCollection 2018.

PMID: 30687269 [PubMed] Free PMC Article

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144.

The links between the gut microbiome and non-alcoholic fatty liver disease (NAFLD).

Safari Z, Gérard P.

Cell Mol Life Sci. 2019 Apr;76(8):1541-1558. doi: 10.1007/s00018-019-03011-w. Epub 2019 Jan 25. Review.

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145.

Identification of the novel role of butyrate as AhR ligand in human intestinal epithelial cells.

Marinelli L, Martin-Gallausiaux C, Bourhis JM, Béguet-Crespel F, Blottière HM, Lapaque N.

Sci Rep. 2019 Jan 24;9(1):643. doi: 10.1038/s41598-018-37019-2.

PMID: 30679727 [PubMed - in process] Free PMC Article

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146.

Optimization of cyclopropane fatty acids production in Yarrowia lipolytica.

Czerwiec Q, Idrissitaghki A, Imatoukene N, Nonus M, Thomasset B, Nicaud JM, Rossignol T.

Yeast. 2019 Mar;36(3):143-151. doi: 10.1002/yea.3379. Epub 2019 Feb 6.

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147.

Surface-Related Features and Virulence Among  Acinetobacter baumannii  Clinical Isolates Belonging to International Clones I and II.

Skerniškytė J, Krasauskas R, Péchoux C, Kulakauskas S, Armalytė J, Sužiedėlienė E.

Front Microbiol. 2019 Jan 8;9:3116. doi: 10.3389/fmicb.2018.03116. eCollection 2018.

PMID: 30671029 [PubMed] Free PMC Article

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148.

Biofilms in Food Processing Environments: Challenges and Opportunities.

Alvarez-Ordóñez A, Coughlan LM, Briandet R, Cotter PD.

Annu Rev Food Sci Technol. 2019 Mar 25;10:173-195. doi: 10.1146/annurev-food-032818-121805. Epub 2019 Jan 17.

PMID: 30653351 [PubMed - in process]

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149.

André Goffeau's imprinting on second generation yeast "genomologists".

Fairhead C, Fischer G, Liti G, Neuvéglise C, Schacherer J.

Yeast. 2019 Apr;36(4):167-175. doi: 10.1002/yea.3377. Epub 2019 Jan 30.

PMID: 30645763 [PubMed - indexed for MEDLINE]

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150.

Genomic Sequence of the Prophage-Free Lactococcus lactis Strain IL6288.

Bolotin A, Aucouturier A, Sorokin A, Bidnenko E.

Microbiol Resour Announc. 2019 Jan 3;8(1). pii: e01545-18. doi: 10.1128/MRA.01545-18. eCollection 2019 Jan.

PMID: 30637406 [PubMed] Free PMC Article

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151.

 Enterococcus faecalis  Countermeasures Defeat a Virulent  Picovirinae  Bacteriophage.

Lossouarn J, Briet A, Moncaut E, Furlan S, Bouteau A, Son O, Leroy M, DuBow MS, Lecointe F, Serror P, Petit MA.

Viruses. 2019 Jan 10;11(1). pii: E48. doi: 10.3390/v11010048.

PMID: 30634666 [PubMed - indexed for MEDLINE] Free PMC Article

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152.

Validation of a global quantitative analysis methodology of tryptophan metabolites in mice using LC-MS.

Lefèvre A, Mavel S, Nadal-Desbarats L, Galineau L, Attucci S, Dufour D, Sokol H, Emond P.

Talanta. 2019 Apr 1;195:593-598. doi: 10.1016/j.talanta.2018.11.094. Epub 2018 Nov 27.

PMID: 30625588 [PubMed - indexed for MEDLINE] Free Article

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153.

Phosphatidylglycerols are induced by gut dysbiosis and inflammation, and favorably modulate adipose tissue remodeling in obesity.

Kayser BD, Lhomme M, Prifti E, Da Cunha C, Marquet F, Chain F, Naas I, Pelloux V, Dao MC, Kontush A, Rizkalla SW, Aron-Wisnewsky J, Bermúdez-Humarán LG, Oakley F, Langella P, Clément K, Dugail I.

FASEB J. 2019 Apr;33(4):4741-4754. doi: 10.1096/fj.201801897R. Epub 2019 Jan 4.

PMID: 30608881 [PubMed - indexed for MEDLINE] Free Article

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154.

The critical role of urease in yogurt fermentation with various combinations of Streptococcus thermophilus and Lactobacillus delbrueckii ssp. bulgaricus.

Yamauchi R, Maguin E, Horiuchi H, Hosokawa M, Sasaki Y.

J Dairy Sci. 2019 Feb;102(2):1033-1043. doi: 10.3168/jds.2018-15192. Epub 2018 Dec 26.

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155.

High Content Screening Confocal Laser Microscopy (HCS-CLM) to Characterize Biofilm 4D Structural Dynamic of Foodborne Pathogens.

Canette A, Deschamps J, Briandet R.

Methods Mol Biol. 2019;1918:171-182. doi: 10.1007/978-1-4939-9000-9_14.

PMID: 30580408 [PubMed - indexed for MEDLINE]

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156.

Characterization of Bacterial Membrane Fatty Acid Profiles for Biofilm Cells.

Dubois-Brissonnet F.

Methods Mol Biol. 2019;1918:165-170. doi: 10.1007/978-1-4939-9000-9_13.

PMID: 30580407 [PubMed - indexed for MEDLINE]

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157.

Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli.

Jervis AJ, Carbonell P, Vinaixa M, Dunstan MS, Hollywood KA, Robinson CJ, Rattray NJW, Yan C, Swainston N, Currin A, Sung R, Toogood H, Taylor S, Faulon JL, Breitling R, Takano E, Scrutton NS.

ACS Synth Biol. 2019 Jan 18;8(1):127-136. doi: 10.1021/acssynbio.8b00398. Epub 2019 Jan 7.

PMID: 30563328 [PubMed - in process]

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158.

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA.

Nat Biotechnol. 2019 Jan;37(1):29-37. doi: 10.1038/nbt.4306. Epub 2018 Dec 17.

PMID: 30556814 [PubMed - indexed for MEDLINE] Free PMC Article

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159.

Synergistic convergence of microbiota-specific systemic IgG and secretory IgA.

Fadlallah J, Sterlin D, Fieschi C, Parizot C, Dorgham K, El Kafsi H, Autaa G, Ghillani-Dalbin P, Juste C, Lepage P, Malphettes M, Galicier L, Boutboul D, Clément K, André S, Marquet F, Tresallet C, Mathian A, Miyara M, Oksenhendler E, Amoura Z, Yssel H, Larsen M, Gorochov G.

J Allergy Clin Immunol. 2019 Apr;143(4):1575-1585.e4. doi: 10.1016/j.jaci.2018.09.036. Epub 2018 Dec 13.

PMID: 30554723 [PubMed - in process] Free Article

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160.

CalY is a major virulence factor and a biofilm matrix protein.

Candela T, Fagerlund A, Buisson C, Gilois N, Kolstø AB, Økstad OA, Aymerich S, Nielsen-Leroux C, Lereclus D, Gohar M.

Mol Microbiol. 2019 Jun;111(6):1416-1429. doi: 10.1111/mmi.14184. Epub 2019 Apr 15.

PMID: 30548239 [PubMed - in process]

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161.

Mucosal Healing and Bacterial Composition in Response to Enteral Nutrition Vs Steroid-based Induction Therapy-A Randomised Prospective Clinical Trial in Children With Crohn's Disease.

Pigneur B, Lepage P, Mondot S, Schmitz J, Goulet O, Doré J, Ruemmele FM.

J Crohns Colitis. 2019 Jul 25;13(7):846-855. doi: 10.1093/ecco-jcc/jjy207.

PMID: 30541015 [PubMed - in process]

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162.

Altered host-gut microbes symbiosis in severely malnourished anorexia nervosa (AN) patients undergoing enteral nutrition: An explicative factor of functional intestinal disorders?

Hanachi M, Manichanh C, Schoenenberger A, Pascal V, Levenez F, Cournède N, Doré J, Melchior JC.

Clin Nutr. 2019 Oct;38(5):2304-2310. doi: 10.1016/j.clnu.2018.10.004. Epub 2018 Oct 9.

PMID: 30527539 [PubMed - in process]

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163.

Correction: Interleukin-22-deficiency and microbiota contribute to the exacerbation of Toxoplasma gondii-induced intestinal inflammation.

Couturier-Maillard A, Froux N, Piotet-Morin J, Michaudel C, Brault L, Le Bérichel J, Sénéchal A, Robinet P, Chenuet P, Jejou S, Dumoutier L, Renauld JC, Iovanna J, Huber S, Chamaillard M, Quesniaux VFJ, Sokol H, Ryffel B.

Mucosal Immunol. 2019 Jan;12(1):290. doi: 10.1038/s41385-018-0112-6.

PMID: 30504789 [PubMed]

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164.

Microbial impact on cholesterol and bile acid metabolism: current status and future prospects.

Kriaa A, Bourgin M, Potiron A, Mkaouar H, Jablaoui A, Gérard P, Maguin E, Rhimi M.

J Lipid Res. 2019 Feb;60(2):323-332. doi: 10.1194/jlr.R088989. Epub 2018 Nov 28. Review.

PMID: 30487175 [PubMed - in process] Free PMC Article

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165.

Effect of mcl-PHA synthesis in flax on plant mechanical properties and cell wall composition.

Wróbel-Kwiatkowska M, Kropiwnicki M, Żebrowski J, Beopoulos A, Dymińska L, Hanuza J, Rymowicz W.

Transgenic Res. 2019 Feb;28(1):77-90. doi: 10.1007/s11248-018-0105-y. Epub 2018 Nov 27.

PMID: 30484148 [PubMed - indexed for MEDLINE] Free PMC Article

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166.

Modulation of the microbiota by oral antibiotics treats immunoglobulin A nephropathy in humanized mice.

Chemouny JM, Gleeson PJ, Abbad L, Lauriero G, Boedec E, Le Roux K, Monot C, Bredel M, Bex-Coudrat J, Sannier A, Daugas E, Vrtovsnik F, Gesualdo L, Leclerc M, Berthelot L, Ben Mkaddem S, Lepage P, Monteiro RC.

Nephrol Dial Transplant. 2019 Jul 1;34(7):1135-1144. doi: 10.1093/ndt/gfy323.

PMID: 30462346 [PubMed - in process]

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167.

Genetic engineering of Ehrlich pathway modulates production of higher alcohols in engineered Yarrowia lipolytica.

Celinska E, Borkowska M, Bialas W, Kubiak M, Korpys P, Archacka M, Ledesma-Amaro R, Nicaud JM.

FEMS Yeast Res. 2019 Mar 1;19(2). doi: 10.1093/femsyr/foy122.

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168.

Bacteria engineered to produce IL-22 in intestine induce expression of REG3G to reduce ethanol-induced liver disease in mice.

Hendrikx T, Duan Y, Wang Y, Oh JH, Alexander LM, Huang W, Stärkel P, Ho SB, Gao B, Fiehn O, Emond P, Sokol H, van Pijkeren JP, Schnabl B.

Gut. 2019 Aug;68(8):1504-1515. doi: 10.1136/gutjnl-2018-317232. Epub 2018 Nov 17.

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169.

Diversity and enzymatic profiles of indigenous yeasts isolated from three types of palm wines produced in Côte d'Ivoire.

Amoikon TLS, Aké MDF, Djéni NT, Grondin C, Casaregola S, Djè KM.

J Appl Microbiol. 2019 Feb;126(2):567-579. doi: 10.1111/jam.14154. Epub 2018 Dec 26.

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170.

Two alkaline motifs in the Lactobacillus salivarius Lv72 OppA surface are important to its adhesin function.

Martín C, Escobedo S, Pérez-Martínez G, Coll-Marqués JM, Martín R, Suárez JE, Quirós LM.

Benef Microbes. 2019 Feb 8;10(1):101-109. doi: 10.3920/BM2018.0052. Epub 2018 Nov 8.

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171.

Filamentous fungi-like secretory pathway strayed in a yeast system: peculiarities of Yarrowia lipolytica secretory pathway underlying its extraordinary performance.

Celińska E, Nicaud JM.

Appl Microbiol Biotechnol. 2019 Jan;103(1):39-52. doi: 10.1007/s00253-018-9450-2. Epub 2018 Oct 23. Review.

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172.

The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism.

Weger BD, Gobet C, Yeung J, Martin E, Jimenez S, Betrisey B, Foata F, Berger B, Balvay A, Foussier A, Charpagne A, Boizet-Bonhoure B, Chou CJ, Naef F, Gachon F.

Cell Metab. 2019 Feb 5;29(2):362-382.e8. doi: 10.1016/j.cmet.2018.09.023. Epub 2018 Oct 18.

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173.

RetroRules: a database of reaction rules for engineering biology.

Duigou T, du Lac M, Carbonell P, Faulon JL.

Nucleic Acids Res. 2019 Jan 8;47(D1):D1229-D1235. doi: 10.1093/nar/gky940.

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174.

Intestinal dysbiosis in inflammatory bowel disease associated with primary immunodeficiency.

Sokol H, Mahlaoui N, Aguilar C, Bach P, Join-Lambert O, Garraffo A, Seksik P, Danion F, Jegou S, Straube M, Lenoir C, Neven B, Moshous D, Blanche S, Pigneur B, Goulet O, Ruemmele F, Suarez F, Beaugerie L, Pannier S, Mazingue F, Lortholary O, Galicier L, Picard C, de Saint Basile G, Latour S, Fischer A.

J Allergy Clin Immunol. 2019 Feb;143(2):775-778.e6. doi: 10.1016/j.jaci.2018.09.021. Epub 2018 Oct 10. No abstract available.

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175.

Sexual responses of male rats to odours from female rats in oestrus are not affected by female germ-free status.

Nielsen BL, Jérôme N, Saint-Albin A, Joly F, Rabot S, Meunier N.

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176.

Engineering the architecture of erythritol-inducible promoters for regulated and enhanced gene expression in Yarrowia lipolytica.

Park YK, Korpys P, Kubiak M, Celinska E, Soudier P, Trébulle P, Larroude M, Rossignol T, Nicaud JM.

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177.

Roux-en-Y Gastric-Bypass and sleeve gastrectomy induces specific shifts of the gut microbiota without altering the metabolism of bile acids in the intestinal lumen.

Duboc H, Nguyen CC, Cavin JB, Ribeiro-Parenti L, Jarry AC, Rainteau D, Humbert L, Coffin B, Le Gall M, Bado A, Sokol H.

Int J Obes (Lond). 2019 Feb;43(2):428-431. doi: 10.1038/s41366-018-0015-3. Epub 2018 Jan 30.

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