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● Boulay M., Al Haddad M., Rul F. 2020. Streptococcus thermophilus growth in soya milk:sucrose consumption, nitrogen metabolism soya protein hydrolysis and role of the cell-wall protease PrtS. International Journal of Food Microbiology 16, 335:108903; doi:10.1016/j.ijfoodmicro.2020.108903

● Lingeswaran A., Metton C., Henry C., Monnet V., Juillard V., Gardan R. 2020. Export of Rgg quorum sensing peptides is mediated by the PptAB ABC transporter in Streptococcus thermophilus LMD-9. Genes 11, 1096; doi: 10.3390/genes11091096.

● Lortal S., El Mecherfi K. E., Mariotti F., Eutamène H., Rul F., Champomier-Vergès M. C., Savary-Auzeloux I. 2020. Aliments fermentés & bénéfices santé : un défi pour la recherche Fermented foods & health benefits: A challenge for research. Cahiers de nutrition et de diététique, 55, 136-147.

● Proust L., Haudebourg E., Sourabié A., Pedersen A., Besançon I., Monnet V., Juillard V. 2020.  Multi-omics approach reveals how yeast extract peptides shape Streptococcus thermophilus metabolism. Applied and Environemental Microbiology. 86, 22:e01446-20; doi: 10.1128/AEM.01446-20




● Henry, C., Haller, L., Blein-Nicolas, M., Zivy, M., Canette, A., Verbrugghe M., Mézange, C., Boulay, M., Gardan, R., Samson, S., Martin, V., André-Leroux, G., Monnet, V. 2019. Identification of Hanks-Type kinase PknB-specific targets in the Streptococcus thermophilus phosphoproteome. Frontiers in Microbiology, 10, article 1329. Doi: 10.3389/fmicb.2019.01329.

● Proust, L., Sourabié, A., Pedersen, M., Besançon, I., Haudebourg, E., Monnet, V., Juillard, V. 2019. Insights into the complexity of yeast extract peptides and their utilization by Streptococcus thermophilus. Frontiers in Microbiology




● Couvigny B., Kulakauskas S., Pons N., Quinquis B., Abraham A.-L., Meylheuc T., Delorme C., Renault P., Briandet R., Lapaque N., Guédon E. (2018) Identification of new factors modulating adhesion abilities of the pioneer commensal bacterium Streptococcus salivarius. Frontiers in Microbiology, 9, article 273.

● Dahmane N., Robert E., Deschamps J., Meylheuc T., Delorme C., Briandet R., Leblond-Bourget N., Guédon E., Payot S. (2018) Impact of Cell Surface Molecules on Conjugative Transfer of the Integrative and Conjugative Element ICESt3 of Streptococcus thermophilus. International Journal of Food Microbiology, 84, 70-81.

● Fernandez N., Wrzosek L., Radziwill-Bienkowska J. M., Ringot-Destrez B., Duviau M.-P., Noordine M.-L., Laroute V., Robert V., Cherbuy C., Daveran-Mingot, M.-L., Cocaign Bousquet M., Léonard R., Robert-Masselot C., Rul F., Ogier-Denis E., Thomas M. and Mercier Bonin, M. 2018. Characterization of mucus-related properties of Streptococcus thermophilus: from adhesion to induction. Frontiers in Physiology. DOI : 10.3389/fphys.2018.00980.

● Proust L., Loux V., Martin V., Magnabosco C., Pedersen M., Juillard V. (2018) Complete genome sequence of the industrial fast-acidifying strain Streptococcus thermophilus N4L. Microbiol. Resour. Announc. 7, e01029-18.




● Delorme C., Legravet N., Jamet E., Hoarau C., Alexandre B., El-Sharoud W. M., Darwish M. S., Renault P. (2017) Study of Streptococcus thermophilus population on a world-wide and historical collection by a new MLST scheme. International Journal of Food Microbiology, 242, 70-81.

● Rul F. Yogurt: Microbiology, Organoleptic Properties and Probiotic Potential.  Chp 19,  pp 419-450.  In: Fermented Foods—Part II: Technological Intervention. Food Biology Series. R. C. Ray and D. Montet (Ed), CRC Press.




● Franza T., Delavenne E., Derré-Bobillot A., Juillard V., Boulay M., Demey E., Vinh J., Lamberet G., Gaudu P. (2016) A partial metabolic pathway enables group b streptococcus to overcome quinone deficiency in a host bacterial community. Molecular Microbiology, 102, 81-91.

● Guillot A., Boulay M., Chambellon E., Gitton C., Monnet V., Juillard V. (2016) Mass spectrometry analysis of the extracellular peptidome of Lactococcus lactis: lines of evidence for the co-existence of extracellular protein hydrolysis and intracellular peptide excretion. Journal of Proteome Research, 15, 3214-3224.

● Juillard V., Lopez-Kleine L., Monnet V. (2016) Proteolytic systems of lactic acid bacteria. In The reference Module in Food sciences. Elsevier Ed.

● Pedersen H.K., Gudmundsdottir V., Nielsen H.B., ... ; MetaHIT Consortium, ..., Ehrlich S.D., Pedersen O. (2016) Human gut microbes impact host serum metabolome and insulin sensitivity. Nature, 535:376-381.

● Pérez-Pascual D., Monnet V., Gardan R. (2016) Bacterial cell-cell communication in the host via RRNPP peptide-binding regulators. Frontiers in Microbiology, 7, article 706.




● Couvigny B., de Wouters T., Kaci G., Jacouton E., Delorme C., Doré J., Renault P., Blottière H. M., Guédon E., Lapaque N. (2015) Commensal Streptococcus salivarius modulates PPAR gamma transcriptional activity in human intestinal epithelial cells. Plos One, 10, e0125371.

● Delorme C., Abraham A.-L., Renault P., Guédon E. (2015) Genomics of Streptococcus salivarius, a major human commensal. Infection Genetics and Evolution, 33, 381-392.

● Forslund K., Hildebrand F., ....; MetaHIT consortium, ..., Ehrlich SD., Bork P., Pedersen O. (2015) Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature,528: 262-266.

● Monnet V., Gardan R. (2015) Quorum-sensing regulators in Gram-positive bacteria: 'cherchez le peptide'. Molecular Microbiology, 97, 181-184.

● Pérez-Pascual D., Gaudu P., Fleuchot B., Besset C., Guillot A., Monnet V., Gardan R..(2015) RovS and its associated signaling peptide form a cell-to-cell communication system required for Streptococcus agalactiae pathogenesis. mBio, 6, e02306-14.

● Rul F., Monnet V. (2015) How microbes communicate in food: a review of signaling molecules and their impact on food quality. Current Opinion in Food Science, 2, 100-105.

● Vale P.F., Lafforgue G., Gatchitch F., Gardan R., Moineau S., Gandon S. (2015) Costs of CRISPR-Cas-mediated resistance in Streptococcus thermophilus. Proceedings of the royal society B, 282, 20151270.




● Li J, Jia H,…. Ehrlich SD; MetaHIT Consortium, Bork P, Wang J. 2014. An integrated catalog of reference genes in the human gut microbiome. Nat. Biotechnol.

● Louesdon S., Charlot-Rougé S., Juillard V., Tourdot-Maréchal R., Béal C. (2014) Osmotic stress affects the stability of freeze-dried Lactobacillus buchneri R1102 as a result of intracellular betaine accumulation and membrane characteristics. Journal of Applied Microbiology, 117, 196-207.

● Nielsen HB, Almeida M., ….. MetaHIT Consortium, Renault P., Sicheritz-Ponten T., Bork P., Wang J., Brunak S., Ehrlich SD. (2014) Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. Nat. Biotechnol.

● Monnet V., Juillard V., Gardan R. (2014) Peptide conversations in Gram-positive bacteria. Critical Reviews in Microbiology, 8, 1-13.

● Thévenard B., Besset C., Choinard S., Fourcassié P., Boyaval P., Monnet V., Rul, F. (2014) Response of S. thermophilus LMD-9 to bacitracin: involvement of a BceRS/AB-like module and of the rhamnose-glucose polysaccharide synthesis pathway. International Journal of Food Microbiology, 177, 89-97.




● De Cardianos, L.P.G., Garcia-Cayuela, T., Yvon, M., Martinez-Cuesta, M.C., Pelaez, C., Requena, T. (2013) Inactivation of the panE gene in Lactococcus lactis enhances formation of cheese aroma. Applied and Environmental Microbiology, 79, 3503-3506.

● Fleuchot B., Guillot A., Mézange C., Besset C., Chambellon E., Monnet V., Gardan R. (2013) Rgg-associated SHP signaling peptides mediate cross-talk in streptococci. Plos One, 8(6):e66042.

● Fontaine L., Goffin P., Dubout H., Delplace B., Baulard A., Lecat-Guillet N., Chambellon E., Gardan R., Hols P. (2013) Mechanism of competence activation by the ComRS signalling system in streptococci. Molecular Microbiology, 87, 1113-1132.

● Gardan R., Besset C., Gitton C., Guillot A., Fontaine L., Hols P., Monnet V. (2013) The extracellular life cycle of ComS, the competence stimulating peptide of Streptococcus thermophilus. Journal of Bacteriology, 195, 1845-1855.

● Kaci G., Goudercourt D., Dennin V., Pot B., Doré J., Ehrlich S. D., Renault P., Blottière H. M., Daniel C., Delorme C. (2013) Anti-Inflammatory properties of Streptococcus salivarius, a commensal bacterium of the oral cavity and digestive tract. Applied and Environmental Microbiology, 80, 928-934.

● Le Chatelier E, Nielsen T, Qin J, Prifti E, …, Raes J, Hansen T; and MetaHIT consortium.(2013) Richness of human gut microbiome correlates with metabolic markers. Nature, 500: 541-546.

● Michelon D., Tachon S., Ebel B., de Coninck J., Feron G., Gervais P., Yvon M., Cachon R. (2013) Screening of lactic acid bacteria for reducing power using tetrazolium salt reduction on milk agar. Journal of Biosciences and Bioengineering, 115, 229-232.

● Rul F., Zagorec M., Champomier-Verges M. (2013) Lactic acid bacteria in fermented food. In: Proteomics in Food: principles and applications. F. Toldra and L. M. L. Nollet (Ed), Springer Science+Business Media New York.

● Thomas M., Wrzosek L., Rul F., Langella P. (2013) Les animaux gnotobiotiques: pour mieux comprendre le microbiote intestinal. Bulletin de l'Académie Vétérinaire de France, 1, 19-23.