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Poirier S, Rué O, Peguilhan R, Coeuret G, Zagorec M, Champomier-Vergès M-C, Loux V, Chaillou, S. Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing. 2018. PLoS ONE 13(9): e0204629.

Teràn L-C, Coeuret G, Raya R, Zagorec M, Champomier-Vergès M-C, Chaillou S. Phylogenomic analysis of Lactobacillus curvatus reveals two lineages distinguished by genes for fermenting plant-derived carbohydrates. Genome BiolEvol. 2018. 10(6):1516-1525.

Poirier S, Coeuret G, Champomier-Vergès M-C, Chaillou S. Draft genome sequences of nine strains of Brochothrix thermosphacta, Carnobacterium divergens, Lactobacillus algidus, Lactobacillus fuchuensis, Lactococcus piscium, Leuconostoc gelidum subsp. gasicomitatum, Pseudomonas lundensis, and Weissella viridescens, a collection of psychrotrophic species involved in meat and seafood spoilage. Genome Announc. 2018. 6(24).

Loux V, Coeuret G, Zagorec M, Champomier Vergès M-C, Chaillou S. Complete and draft genome sequences of nine Lactobacillus sakei strains selected from the three known phylogenetic lineages and their main clonal complexes. Genome Announc. 2018. 6(16).

Couvigny B, Kulakauskas S, Pons N, Quinquis B, Abraham A-L, Meylheuc T, Delorme C, Renault P, Briandet R, Lapaque N, Guédon E. Identification of new factors modulating adhesion abilities of the pioneer commensal bacterium Streptococcus salivarius. 2018. Front Microbiol. 20;9:273.

Isenring J, Köhler J, Nakata M, Frank M, Jans C, Renault P, Danne C, Dramsi S, Kreikemeyer B, Oehmcke-Hecht S. Streptococcus gallolyticus subsp. gallolyticus endocarditis isolate interferes with coagulation and activates the contact system. 2018. Virulence. 9(1):248-261.


Delorme C, Legravet N, Jamet E, Hoarau C, Alexandre B, El-Sharoud W-M, Darwish M-S, Renault P. Study of Streptococcus thermophilus population on a world-wide and historical collection by a new MLST scheme. Int J Food Microbiol. 2017. 242:70-81.

Teràn L-C, Coeuret G, Raya R, Champomier-Vergès M-C, Chaillou S. Draft genome sequence of Lactobacillus curvatus FLEC03, a meat-borne isolate from beef carpaccio packaged in a modified atmosphere. Genome Announc. 2017. 5(26).

Fougy L, Coeuret G, Champomier-Vergès M-C, Chaillou S. Draft genome sequence of Serratia proteamaculans MFPA44A14-05, a model organism for the study of meat and seafood spoilage. Genome Announc. 2017. 5(23).

Kaindi D-W-M, Kogi-Makau W, Lule GN, Kreikemeyer B, Renault P, Bonfoh B, Schelling E, Zinsstag J, Lacroix C, Meile L, Jans C, Hattendorf J. Investigating the association between African spontaneously fermented dairy products, faecal carriage of Streptococcus infantarius subsp. infantarius and colorectal adenocarcinoma in Kenya. 2017. Acta Trop. 178:10-18.

Couvigny B, Lapaque N, Rigottier-Gois L, Guillot A, Chat S, Meylheuc T, Kulakauskas S, Rohde M, Mistou M-Y, Renault P, Doré J, Briandet R, Serror P, Guédon E. Three glycosylated serine-rich repeat proteins play a pivotal role inadhesion and colonization of the pioneer commensal bacterium, Streptococcus salivarius. 2017. Environ Microbiol. 2017. 19(9):3579-3594.


Fougy L, Desmonts M-H, Coeuret G, Fassel C, Hamon E, Hézard B, Champomier-Vergès M-C, Chaillou S. Reducing salt in raw pork sausages increases spoilage and correlates with reduced bacterial diversity. Appl Environ Microbiol. 2016. 82(13):3928-39.

Papadimitriou K, Mavrogonatou E, Bolotin A, Tsakalidou E, Renault P. Whole-Genome Sequence of the cheese isolate Streptococcus macedonicus 679. Genome Announc. 2016. 4(5).

Pedersen H-K, Gudmundsdottir V, Nielsen H-B, Hyotylainen T, Nielsen T, Jensen B-A, Forslund K, Hildebrand F, Prifti E, Falony G, Le Chatelier E, Levenez F, DoréJ, Mattila I, Plichta D-R, Pöhö P, Hellgren L-I, Arumugam M, Sunagawa S, Vieira-Silva S, Jørgensen T, Holm J-B, Trošt K; MetaHIT Consortium, Kristiansen K, Brix S, Raes J, Wang J, Hansen T, Bork P, Brunak S, Oresic M, Ehrlich S-D, Pedersen O. Human gut microbes impact host serum metabolome and insulin sensitivity. 2016. Nature. 535(7612):376-81.


Kergourlay G, Taminiau B, Daube G, Champomier Vergès MC. Metagenomic insights into the dynamics of microbial communities in food. Int J Food Microbiol. 2015. 213:31-9.

Chaillou S, Chaulot-Talmon A, Caekebeke H, Cardinal M, Christieans S, Denis C, Desmonts MH, Dousset X, Feurer C, Hamon E, Joffraud JJ, La Carbona S, Leroi F, Leroy S, Lorre S, Macé S, Pilet MF, Prévost H, Rivollier M, Roux D, Talon R, Zagorec M, Champomier-Vergès MC. Origin and ecological selection of core and food-specific bacterial communities associated with meat and seafood spoilage. ISME J. 2015 May;9(5):1105-18.

Couvigny, B., Therial, C., Gautier, C., Renault, P., Briandet, R., Guedon, E. (2015). . Streptococcus thermophilus biofilm formation: a remnant trait of ancestral commensal life?. Plos One, 10 (6), e0128099. IF : 3.53

Couvigny, B., de Wouters, T., Kaci, G., Jacouton, E., Delorme, C., Dore, J., Renault, P., Blottière, H., Guédon, E., Lapaque, N. (2015). Commensal Streptococcus salivarius modulates PPARγ transcriptional activity in human intestinal epithelial cells. Plos One, 10 (5). IF: 3.53

Papadimitriou, K., Anastasiou, R., Maistrou, E., Plakas, T., Papandreou, N. C., Hamodrakas, S. J., Ferreira, S., Supply, P., Renault, P., Pot, B., Tsakalidou, E. (2015). . Acquisition through horizontal gene transfer of plasmid pSMA198 by Streptococcus macedonicus ACA-DC 198 points towards the dairy origin of the species. Plos One, 10 (1). IF: 3.53

Renault, P., Zagorec, M., Champomier-Vergès, M.-C. (2015). . Communautés microbiennes des aliments. In: Marie-Christine Champomier-Vergès, Monique Zagorec, dir., La métagénomique. Développements et futures applications (p. 57-70). Collection Savoir-Faire. Versailles, FRA : Editions Quae.

Almeida M, Hébert A, Abraham A-L, Rasmussen S, Monnet C, Pons N, Delbès C, Loux V, Batto J-M, Leonard P, Kennedy S, Ehrlich S-D, Pop M, Montel M-C, Irlinger F, Renault P. Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products. BMC Genomics. 2014. 15:1101.

Leroi F, Cornet J, Chevalier F, Cardinal M, Coeuret G, Chaillou S, Joffraud J-J. Selection of bioprotective cultures for preventing cold-smoked salmon spoilage. 2015. Int J Food Microbiol. 213:79-87.

Olguín N, Champomier-Vergès M-C, Anglade P, Baraige F, Cordero-Otero R, Bordons A, Zagorec M, Reguant C. Transcriptomic and proteomic analysis of Oenococcus oeni PSU-1 response to ethanol shock. 2015. Food Microbiol. 51:87-95.

Papadimitriou K, Anastasiou R, Maistrou E, Plakas T, Papandreou NC, Hamodrakas S-J, Ferreira S, Supply P, Renault P, Pot B, Tsakalidou E. Acquisition through horizontal gene transfer of plasmid pSMA198 by Streptococcus macedonicus ACA-DC 198 points towards the dairy origin of the species. 2015. PLoS One. 10(1):e0116337.

Couvigny B, Thérial C, Gautier C, Renault P, Briandet R, Guédon E. Streptococcus thermophilus biofilm formation: A remnant trait of ancestral commensal life? 2015. PLoS One. 10(6):e0128099.

Couvigny B, de Wouters T, Kaci G, Jacouton E, Delorme C, Doré J, Renault P, Blottière H-M, Guédon E, Lapaque N. Commensal Streptococcus salivarius Modulates PPARγ transcriptional activity in human intestinal epithelial cells. 2015. PLoS One. 10(5):e0125371.

Najjari, A., Amairi H, Chaillou S, Mora D, Boudabous S, Zagorec M,Ouzari M. 2015. Phenotypic and genotypic characterization of peptidoglycan hydrolases of Lactobacillus sakei. 2015. Journal of Advanced Research.

Wade M, Boumédiène B, Chaillou S, Godon J-J, MessaBoudjema B, Sari T, Harmand J, Bouchez T, Cloez B, Lobry C, Rapaport A, Arditi R, 2015. Perspective in Mathematical modelling for microbial ecology. 2015 Ecological Modelling. 321:64-74.


Almeida M, Hébert A, Abraham A-L, Rasmussen S, Monnet C, Pons N, Delbès C, Loux V, Batto J-M, Leonard P, Kennedy S, Ehrlich S-D, Pop M, Montel M-C, Irlinger F, Renault P. Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products. BMC Genomics. 2014. 15:1101.

Cheeseman K, Ropars J, Renault P, Dupont J, Gouzy J, Branca A, Abraham A-L, Ceppi M, Conseiller E, Debuchy R, Malagnac F, Goarin A, Silar P, Lacoste S, Sallet E, Bensimon A, Giraud T, Brygoo Y. Multiple recent horizontal transfers of a large genomic region in cheese making fungi. 2014. Nat Commun. 5:2876.

Delorme C, Abraham A-L., Renault P., Guedon E. Genomics of Streptococcus salivarius, a major human commensal. 2014. Infection, genetics and evolution.

Papadimitriou K, Anastasiou R, Mavrogonatou E, Blom J, Papandreou N-C, Hamodrakas S-J, Ferreira S, Renault P, Supply P, Pot B, Tsakalidou E. Comparative genomics of the dairy isolate Streptococcus macedonicus ACA-DC 198 against related members of the Streptococcus bovis/Streptococcus equinus complex. 2014. BMC Genomics. 15.

Kaci G, Goudercourt D, Dennin V, Pot B, Dore J, Dusko Ehrlich S, Renault P, Blottiere H, Daniel C, Delorme C. Anti-inflammatory properties of Streptococcus salivarius, a commensal bacterium of the oral cavity and digestive tract. 2014. Applied and Environmental Microbiology. 80(3), 928-934.

Ceuppens S, Li D, Uyttendaele M, Renault P, Ross P, Van Ranst M, Cocolin L, Donaghy J. Molecular methods in food safety microbiology: Interpretation and implications of nucleic acid detection. 2014.omprehensive Reviews in Food Science and Food Safety. 13(4); 551-577.

Nielsen H-B, Almeida M, Juncker A-S, Rasmussen S, Li J, Sunagawa S, Plichta D-R, Gautier L, Pedersen A-G, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto J-M, Quintanilha Dos Santos, M-B, Blom N, Borruel N, Burgdorf K-S, Boumezbeur F, Casellas F, Dore J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas R-S, Kennedy S, Kristiansen K, Kultima J-R, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery D-W, Yamada T, MetaHIT Consortium, Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich S, Almeida M, Le Chatelier E, Batto J-M, Boumezbeur F, Dore J, Kennedy S, Léonard P, Levenez F, Moumen B, Pons N, Prifti E, Renault P, Jamet A, Cultrone A, Delorme C, Maguin E, Guedon E, Vandemeulebrouck G, Kaci G, Blottiere H, Van De Guchte M, Sanchez N, Dervyn R, Layec S, Winogradsky Y. Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. 2014. Nature Biotechnology. 32, 822–828.

Li J, Jia H, Cai X, Zhong H, Feng Q, Sunagawa S, Arumugam M, Kultima J-R, Prifti E, Nielsen T, Juncker A-S, Manichanh C, Chen B, Zhang W, Levenez F, Wang J, Xu X, Xiao L, Liang S, Zhang D, Zhang Z, Chen W, Zhao H, Al-Aama J-Y, Edris S, Yang H, Wang J, Hansen T, Nielsen H-B, Brunak S, Kristiansen K, Guarner F, Pedersen O, Dore J, Ehrlich S, MetaHIT Consortium, Bork P, Wang J, Pons N, Le Chatelier E, Batto J-M, Kennedy S, Haimet F, Winogradsky, Cultrone A, Leclerc M, Juste C, Guedon E, Delorme C, Layec S, Kaci G, Van De Guchte M, Vandemeulebrouck G, Jamet A, Dervyn R, Sanchez N, Blottiere H, Maguin E, Renault P, Tap J. An integrated catalog of reference genes in the human gut microbiome. 2014. Nature Biotechnology. 32, 834-841.

Velly H, Renault P, Abraham A-L, Loux V, Delacroix-Buchet A, Fonseca F, Bouix M. Genome Sequence of the Lactic Acid Bacterium Lactococcus lactis subsp. lactis TOMSC161, isolated from a non scaled curd pressed cheese. 2014. Genome announcements, 2(6).



Cailliez-Grimal C, Chaillou S, Anba-Mondoloni J, Loux V, Afzal M-I, Rahman A, Kergourlay G, Champomier-Vergès M-C, Zagorec M, Dalgaard P, Leisner J-J, Prevost L, Revol-Junelles A-M, Borges F. Complete chromosome sequence of Carnobacterium maltaromaticum LMA 28. 2013. Genome Announc 1.

Chaillou S, Lucquin I, Najjari A, Zagorec M, Champomier-Vergès M-C. Population  genetics of Lactobacillus sakei reveals three lineages with distinct evolutionary histories. 2013. PLoS One. 8(9)

Anba-Mondoloni J, Chaillou S, Zagorec M, Champomier-Vergès M-C. Catabolism of N-acetylneuraminic acid, a fitness function of the food-borne lactic acid bacterium Lactobacillus sakei, involves two newly characterized proteins. 2013. Appl Environ Microbiol. 79(6):2012-2018.

Cotillard A, Kennedy S, Kong L-C, Prifti E, Pons N, Le Chatelier E, Almeida M, Quinquis B, Levenez F, Galleron N, Gougis S, Rizkalla S, Batto J-M, Renault P, Doré J, Zucker J-D, Clément K, Dusko Ehrlich S, Blottiere H, Leclerc M, Juste C, Lepage P, Fouqueray C, Gauchi J-P, Gibrat J-F, Loux V, Carré W, Maguin E, Van De Guchte M, Jamet A, Boumezbeur F, Layec S Dietary intervention impact on gut microbial gene richness. 2013. Nature. 500, 585–588.

Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, Almeida M, Arumugam M, Batto J-M, Kennedy S, Léonard P, Li J, Burgdorf K, Grarup N, Jørgensen T, Brandslund I, Nielsen H-B, Juncker A-S, Bertalan M, Levenez F, Pons N, Rasmussen S, Sunagawa S, Tap J, Tims S, Zoetendal E-G, Brunak S, Clément K, Dore J, Kleerebezem M, Kristiansen K, Renault P, Sicheritz-Ponten T, de Vos W-M, Zucker J-D, Raes J, Hansen T, Bork P, Wang J, Ehrlich S, Pedersen O, Guedon E, Delorme C, Layec S, Kaci G, Van De Guchte M, Vandemeulebrouck G, Jamet A, Dervyn R, Sanchez N, Maguin E, Haimet F, Winogradsky Y, Cultrone A, Leclerc M, Juste C, Blottiere H. Richness of human gut microbiome correlates with metabolic markers. 2013. Nature. 500(7464); 541-546.

Morrison D-A, Guedon E, Renault P. Competence for natural genetic transformation in the Streptococcus bovis Group Streptococci S. infantarius and S. macedonicus. 2013. Journal of Bacteriology. 195(11); 2612-2620.

Vergauwen B, Verstraete K, Senadheera D-B, Dansercoer A, Cvitkovitch D-G, Guedon E & Savvides S-N. Molecular and structural basis of glutathione import in Gram-positive bacteria via GshT and the cystine ABC importer TcyBC of Streptococcus mutans. 2013. Mol Microbiol.


Guilbaud, M., M. Zagorec, S. Chaillou, and M. C. Champomier-Vergès. 2012. Intraspecies diversity of Lactobacillus sakei response to oxidative stress and variability of strain performance in mixed strains challenges. Food Microbiol 29:197-204.

Lucquin, I., M. Zagorec, M. Champomier-Vergès, and S. Chaillou. 2012. Fingerprint of lactic acid bacteria population in beef carpaccio is influenced by storage process and seasonal changes. Food Microbiol 29:187-96.

Qin, J., Li, Y., Cai, Z., Li, S., Zhu, J., Zhang, F., Liang, S., Zhang, W., Guan, Y., Shen, D., Peng, Y., Zhang, D., Jie, Z., Wu, W., Qin, Y., Xue, W., Li, J., Han, L., Lu, D., Wu, P., Dai, Y., Sun, X., Li, Z., Tang, A., Zhong, S., Li, X., Chen, W., Xu, R., Wang, M., Feng, Q., Gong, M., Yu, J., Zhang, Y., Zhang, M., Hansen, T., Sanchez, G., Raes, J., Falony, G., Okuda, S., Almeida, M., LeChatelier, E., Renault, P., Pons, N., Batto, J. M., Zhang, Z., Chen, H., Yang, R., Zheng, W., Li, S., Yang, H., Wang, J., Ehrlich, S. D., Nielsen, R., Pedersen, O., Kristiansen, K. & Wang, J. (2012). A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490, 55-60. IF: 36.101

Meslier, V., Loux, V. & Renault, P. (2012). Genome sequence of Lactococcus raffinolactis strain 4877, isolated from natural dairy starter culture. J Bacteriol 194, 6364. IF: 3.726

Meslier, V., Loux, V. & Renault, P. (2012). Genome sequence of Leuconostoc pseudomesenteroides strain 4882, isolated from a dairy starter culture. J Bacteriol 194, 6637. IF: 3.726

Hebert, L., Moumen, B., Pons, N., Duquesne, F., Breuil, M. F., Goux, D., Batto, J. M., Laugier, C., Renault, P. & Petry, S. (2012). Genomic characterization of the Taylorella genus. PLoS One 7, e29953. IF: 4.411

El-Sharoud, W. M., Delorme, C., Darwish, M. S. & Renault, P. (2012). Genotyping of Streptococcus thermophilus strains isolated from traditional Egyptian dairy products by sequence analysis of the phosphoserine phosphatase (serB) gene with phenotypic characterizations of the strains. J Appl Microbiol 112, 329-37. IF: 2.365

Barretto, C., Alvarez-Martin, P., Foata, F., Renault, P. & Berger, B. (2012). Genome sequence of the lantibiotic bacteriocin producer Streptococcus salivarius strain K12. J Bacteriol 194, 5959-60. IF: 3.726


Curiel, J. A., H. Rodriguez, B. de Las Rivas, P. Anglade, F. Baraige, M. Zagorec, M. Champomier-Vergès, R. Munoz, and F. Lopez de Felipe. 2011. Response of a Lactobacillus plantarum human isolate to tannic acid challenge assessed by proteomic analyses. Mol Nutr Food Res 55:1454-65.

Wescombe, P. A., Upton, M., Renault, P., Wirawan, R. E., Power, D., Burton, J. P., Chilcott, C. N. & Tagg, J. R. (2011). Salivaricin 9, a new lantibiotic produced by Streptococcus salivarius. Microbiology 157, 1290-9. IF: 3.025

Perez-Nunez, D., Briandet, R., David, B., Gautier, C., Renault, P., Hallet, B., Hols, P., Carballido-Lopez, R. & Guedon, E. (2011). A new morphogenesis pathway in bacteria: unbalanced activity of cell wall synthesis machineries leads to coccus-to-rod transition and filamentation in ovococci. Mol Microbiol 79, 759-71. IF: 4.819

Kaci, G., Lakhdari, O., Dore, J., Ehrlich, S. D., Renault, P., Blottiere, H. M. & Delorme, C. (2011). Inhibition of the NF-kappaB pathway in human intestinal epithelial cells by commensal Streptococcus salivarius. Appl Environ Microbiol 77, 4681-4. IF: 3.778

Hebert, L., Moumen, B., Duquesne, F., Breuil, M. F., Laugier, C., Batto, J. M., Renault, P. & Petry, S. (2011). Genome sequence of Taylorella equigenitalis MCE9, the causative agent of contagious equine metritis. J Bacteriol 193, 1785. IF: 3.726

Guedon, E., Delorme, C., Pons, N., Cruaud, C., Loux, V., Couloux, A., Gautier, C., Sanchez, N., Layec, S., Galleron, N., Almeida, M., van de Guchte, M., Kennedy, S. P., Ehrlich, S. D., Gibrat, J. F., Wincker, P. & Renault, P. (2011). Complete genome sequence of the commensal Streptococcus salivarius strain JIM8777. J Bacteriol 193, 5024-5. IF: 3.726

Delumeau, O., Lecointe, F., Muntel, J., Guillot, A., Guedon, E., Monnet, V., Hecker, M., Becher, D., Polard, P. & Noirot, P. (2011). The dynamic protein partnership of RNA polymerase in Bacillus subtilis. Proteomics 11, 2992-3001. IF: 4.815

Delorme, C., Guedon, E., Pons, N., Cruaud, C., Couloux, A., Loux, V., Chiapello, H., Poyart, C., Gautier, C., Sanchez, N., Almeida, M., Kennedy, S. P., Ehrlich, S. D., Gibrat, J. F., Wincker, P. & Renault, P. (2011). Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3. J Bacteriol 193, 5041-2. IF: 3.726

Delorme, C., Bartholini, C., Luraschi, M., Pons, N., Loux, V., Almeida, M., Guedon, E., Gibrat, J. F. & Renault, P. (2011). Complete genome sequence of the pigmented Streptococcus thermophilus strain JIM8232. J Bacteriol 193, 5581-2. IF: 3.726

Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., Fernandes, G. R., Tap, J., Bruls, T., Batto, J. M., Bertalan, M., Borruel, N., Casellas, F., Fernandez, L., Gautier, L., Hansen, T., Hattori, M., Hayashi, T., Kleerebezem, M., Kurokawa, K., Leclerc, M., Levenez, F., Manichanh, C., Nielsen,

H. B., Nielsen, T., Pons, N., Poulain, J., Qin, J., Sicheritz-Ponten, T., Tims, S., Torrents, D., Ugarte, E., Zoetendal, E. G., Wang, J., Guarner, F., Pedersen, O., de Vos, W. M., Brunak, S., Dore, J., Meta, H. I. T. C., Antolin, M., Artiguenave, F., Blottiere, H. M., Almeida, M., Brechot, C., Cara, C., Chervaux, C., Cultrone, A., Delorme, C., Denariaz, G., Dervyn, R., Foerstner, K. U., Friss, C., van de Guchte, M., Guedon, E., Haimet, F., Huber, W., van Hylckama-Vlieg, J., Jamet, A., Juste, C., Kaci, G., Knol, J., Lakhdari, O., Layec, S., Le Roux, K., Maguin, E., Merieux, A., Melo Minardi, R., M'Rini, C., Muller, J., Oozeer, R., Parkhill, J.,

Renault, P., Rescigno, M., Sanchez, N., Sunagawa, S., Torrejon, A., Turner, K., Vandemeulebrouck, G., Varela, E., Winogradsky, Y., Zeller, G., Weissenbach, J., Ehrlich, S. D. & Bork, P. (2011). Enterotypes of the human gut microbiome. Nature 473, 174-80. IF: 36.101

Aleksandrzak-Piekarczyk, T., Polak, J., Jezierska, B., Renault, P. & Bardowski, J. (2011). Genetic characterization of the CcpA-dependent, cellobiose-specific PTS system comprising CelB, PtcB and PtcA that transports lactose in Lactococcus lactis IL1403. Int J Food Microbiol 145, 186-94. IF: 3.143


Aires, J., P. Anglade, F. Baraige, M. Zagorec, M. C. Champomier-Vergès, and M. J. Butel. 2010. Proteomic comparison of the cytosolic proteins of three Bifidobacterium longum human isolates and B. longum NCC2705. BMC Microbiol 10:29.

Chiaramonte, F., P. Anglade, F. Baraige, J. J. Gratadoux, P. Langella, M. C. Champomier-Vergès, and M. Zagorec. 2010. Analysis of Lactobacillus sakei mutants selected after adaptation to the gastrointestinal tracts of axenic mice. Appl Environ Microbiol 76:2932-9.

Duhutrel, P., C. Bordat, T. D. Wu, M. Zagorec, J. L. Guerquin-Kern, and M. C. Champomier-Vergès. 2010. Iron sources used by the nonpathogenic lactic acid bacterium Lactobacillus sakei as revealed by electron energy loss spectroscopy and secondary-ion mass spectrometry. Appl Environ Microbiol 76:560-5.

Fadda, S., P. Anglade, F. Baraige, M. Zagorec, R. Talon, G. Vignolo, and M. C. Champomier-Vergès. 2010. Adaptive response of Lactobacillus sakei 23K during growth in the presence of meat extracts: a proteomic approach. Int J Food Microbiol 142:36-43.

Jones, R. J., E. Wiklund, M. Zagorec, and J. R. Tagg. 2010. Evaluation of stored lamb bio-preserved using a three-strain cocktail of Lactobacillus sakei. Meat Sci 86:955-9.

Maze, A., G. Boel, M. Zuniga, A. Bourand, V. Loux, M. J. Yebra, V. Monedero, K. Correia, N. Jacques, S. Beaufils, S. Poncet, P. Joyet, E. Milohanic, S. Casaregola, Y. Auffray, G. Perez-Martinez, J. F. Gibrat, M. Zagorec, C. Francke, A. Hartke, and J. Deutscher. 2010. Complete genome sequence of theprobiotic Lactobacillus casei strain BL23. J Bacteriol 192:2647-8.

McLeod, A., M. Zagorec, M. C. Champomier-Vergès, K. Naterstad, and L. Axelsson. 2010. Primary metabolism in Lactobacillus sakei food isolates by proteomic analysis. BMC Microbiol 10:120.

Sperandio, B., Gautier, C., Pons, N., Ehrlich, D. S., Renault, P. & Guedon, E. (2010). Three paralogous LysR-type transcriptional regulators control sulfur amino acid supply in Streptococcus mutans. J Bacteriol 192, 3464-73. IF: 3.726

Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F., Yamada, T., Mende, D. R., Li, J., Xu, J., Li, S., Li, D., Cao, J., Wang, B., Liang, H., Zheng, H., Xie, Y., Tap, J., Lepage, P., Bertalan, M., Batto, J. M., Hansen, T., Le Paslier, D., Linneberg, A., Nielsen, H. B., Pelletier, E., Renault, P., Sicheritz-Ponten, T., Turner, K., Zhu, H., Yu, C., Li, S., Jian, M., Zhou, Y., Li, Y., Zhang, X., Li, S., Qin, N., Yang, H., Wang, J., Brunak, S., Dore, J., Guarner, F., Kristiansen, K., Pedersen, O., Parkhill, J., Weissenbach, J., Meta, H. I. T. C., Bork, P., Ehrlich, S. D. & Wang, J. (2010). A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464, 59-65. IF: 36.101

Delorme, C., Bartholini, C., Bolotine, A., Ehrlich, S. D. & Renault, P. (2010). Emergence of a cell wall protease in the Streptococcus thermophilus population. Appl Environ Microbiol 76, 451-60. IF: 3.778


Chaillou, S., M. Daty, F. Baraige, A. M. Dudez, P. Anglade, R. Jones, C. A. Alpert, M. C. Champomier-Vergès, and M. Zagorec. 2009. Intraspecies genomic diversity and natural population structure of the meat-borne lactic acid bacterium Lactobacillus sakei. Appl Environ Microbiol 75:970-80.

Chiaramonte, F., S. Blugeon, S. Chaillou, P. Langella, and M. Zagorec. 2009. Behavior of the meat-borne bacterium Lactobacillus sakei during its transit through the gastrointestinal tracts of axenic and conventional mice. Appl Environ Microbiol 75:4498-505. Prize: C. Shearman, Faculty of 1000 Biology, 30 06 09.

Jones, R. J., M. Zagorec, G. Brightwell, and J. R. Tagg. 2009. Inhibition by Lactobacillus sakei of other species in the flora of vacuum packaged raw meats during prolonged storage. Food Microbiol 26:876-81.

Macias-Rodriguez, M. E., M. Zagorec, F. Ascencio, R. Vazquez-Juarez, and M. Rojas. 2009. Lactobacillus fermentum BCS87 expresses mucus- and mucin-binding proteins on the cell surface. J Appl Microbiol 107:1866-74.

Herve-Jimenez, L., Guillouard, I., Guedon, E., Boudebbouze, S., Hols, P., Monnet, V., Maguin, E. & Rul, F. (2009). Postgenomic analysis of streptococcus thermophilus cocultivated in milk with Lactobacillus delbrueckii subsp. bulgaricus: involvement of nitrogen, purine, and iron metabolism. Appl Environ Microbiol 75, 2062-73. IF: 3.778

Bensalah, F., Delorme, C. & Renault, P. (2009). Characterisation of thermotolerant cocci from indigenous flora of 'leben' in algerian arid area and DNA identification of atypical Lactococcus lactis strains. Curr Microbiol 59, 139-46. IF: 1.510


Pons, N., Batto, J. M., Ehrlich, S. D. & Renault, P. (2008). Development of software facilities to characterize regulatory binding motifs and application to streptococcaceae. J Mol Microbiol Biotechnol 14, 67-73. IF: 2.648

Herve-Jimenez, L., Guillouard, I., Guedon, E., Gautier, C., Boudebbouze, S., Hols, P., Monnet, V., Rul, F. & Maguin, E. (2008). Physiology of Streptococcus thermophilus during the late stage of milk fermentation with special regard to sulfur amino-acid metabolism. Proteomics 8, 4273-86. IF: 4.815

Delorme, C. (2008). Safety assessment of dairy microorganisms: Streptococcus thermophilus. Int J Food Microbiol 126, 274-7. IF: 3.143

Ammor, M. S., M. Gueimonde, M. Danielsen, M. Zagorec, A. H. van Hoek, C. G. de Los Reyes-Gavilan, B. Mayo, and A. Margolles. 2008. Two different tetracycline resistance mechanisms, plasmid-carried tet(L) and chromosomally located transposon-associated tet(M), coexist in Lactobacillus sakei Rits 9. Appl Environ Microbiol 74:1394-401.

Binesse, J., C. Delsert, D. Saulnier, M. C. Champomier-Vergès, M. Zagorec, H. Munier-Lehmann, D. Mazel, and F. Le Roux. 2008. Metalloprotease vsm is the major determinant of toxicity for extracellular products of Vibrio splendidus. Appl Environ Microbiol 74:7108-17.

Crutz-Le Coq, A. M., and M. Zagorec. 2008. Vectors for Lactobacilli and other Gram-positive bacteria based on the minimal replicon of pRV500 from Lactobacillus sakei. Plasmid 60:212-20.

Fadda, S., C. Chambon, M. C. Champomier-Vergès, R. Talon, and G. Vignolo. 2008. Lactobacillus role during conditioning of refrigerated and vacuum-packaged Argentinean meat. Meat Sci 79:603-10.

Jones, R. J., H. M. Hussein, M. Zagorec, G. Brightwell, and J. R. Tagg. 2008. Isolation of lactic acid bacteria with inhibitory activity against pathogens and spoilage organisms associated with fresh meat. Food Microbiol 25:228-34.

Jones, R. J., H. M. Hussein, M. Zagorec, G. Brightwell, and J. R. Tagg. 2008. Isolation of lactic acid bacteria with inhibitory activity against pathogens and spoilage organisms associated with fresh meat. Food Microbiol 25:228-34.

Najjari, A., H. Ouzari, A. Boudabous, and M. Zagorec. 2008. Method for reliable isolation of Lactobacillus sakei strains originating from Tunisian seafood and meat products. Int J Food Microbiol 121:342-51.

Sanchez, B., M. C. Champomier-Vergès, P. Anglade, F. Baraige, C. G. de Los Reyes-Gavilan, A. Margolles, and M. Zagorec. 2008. A preliminary analysis of Bifidobacterium longum exported proteins by two-dimensional electrophoresis. J Mol Microbiol Biotechnol 14:74-9.

Supplementary List

Yu, A., G. Lepere, G, Jay F, Wang J, Bapaume L, Wang Y, Abraham AL, Penterman J, Fischer RL, Voinnet O, Navarro L. (2013). "Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense." Proc Natl Acad Sci U S A 110(6): 2389-2394. IF : 9.771

Abraham, A. L., M. Nagarajan, Veyrieras JB, Bottin H, Steinmetz LM, Yvert G (2012). "Genetic modifiers of chromatin acetylation antagonize the reprogramming of epi-polymorphisms." PLoS Genet 8(9): e1002958. IF : 9.543

Nagarajan, M., J. B. Veyrieras, de Dieuleveult M, Bottin H, Fehrmann S, Abraham AL, Croze S, Steinmetz LM, Gidrol X, Yvert G (2010). "Natural single-nucleosome epi-polymorphisms in yeast." PLoS Genet 6(4): e1000913. IF : 9.543

Abraham, A. L., J. Pothier, et al. (2009). "Alternative to homo-oligomerisation: the creation of local symmetry in proteins by internal amplification." J Mol Biol 394(3): 522-534.

Treangen, T. J., A. L. Abraham, et al. (2009). "Genesis, effects and fates of repeats in prokaryotic genomes." FEMS Microbiol Rev 33(3): 539-571. IF: 4.008
Abraham, A. L., E. P. Rocha, et al. (2008). "Swelfe: a detector of internal repeats in sequences and structures." Bioinformatics 24(13): 1536-1537. IF: 4.877