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Dernière mise à jour : Mai 2018

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PUBLICATIONS

> 2019

1.

Porphyromonas, a potential predictive biomarker of Pseudomonas aeruginosa pulmonary infection in cystic fibrosis.

Keravec M, Mounier J, Guilloux CA, Fangous MS, Mondot S, Vallet S, Gouriou S, Le Berre R, Rault G, Férec C, Barbier G, Lepage P, Héry-Arnaud G.

BMJ Open Respir Res. 2019 Mar 12;6(1):e000374. doi: 10.1136/bmjresp-2018-000374. eCollection 2019.

2.

Fructose malabsorption induces cholecystokinin expression in the ileum and cecum by changing microbiota composition and metabolism.

Zhang X, Grosfeld A, Williams E, Vasiliauskas D, Barretto S, Smith L, Mariadassou M, Philippe C, Devime F, Melchior C, Gourcerol G, Dourmap N, Lapaque N, Larraufie P, Blottière HM, Herberden C, Gerard P, Rehfeld JF, Ferraris RP, Fritton JC, Ellero-Simatos S, Douard V.

FASEB J. 2019 Apr 2:fj201801526RR. doi: 10.1096/fj.201801526RR. [Epub ahead of print]

 

3.

The potential probiotic Lactobacillus rhamnosus CNCM I-3690 strain protects the intestinal barrier by stimulating both mucus production and cytoprotective response.

Martín R, Chamignon C, Mhedbi-Hajri N, Chain F, Derrien M, Escribano-Vázquez U, Garault P, Cotillard A, Pham HP, Chervaux C, Bermúdez-Humarán LG, Smokvina T, Langella P.

Sci Rep. 2019 Apr 1;9(1):5398. doi: 10.1038/s41598-019-41738-5.

 

4.

Tryptophan and metabolic syndrome, a new challenge for health.

Agus A, Sokol H.

Med Sci (Paris). 2019 Mar;35(3):213-215. doi: 10.1051/medsci/2019040. Epub 2019 Apr 1. French. No abstract available.

 

5.

AA16, a new lytic polysaccharide monooxygenase family identified in fungal secretomes.

Filiatrault-Chastel C, Navarro D, Haon M, Grisel S, Herpoël-Gimbert I, Chevret D, Fanuel M, Henrissat B, Heiss-Blanquet S, Margeot A, Berrin JG.

Biotechnol Biofuels. 2019 Mar 16;12:55. doi: 10.1186/s13068-019-1394-y. eCollection 2019.

 

6.

Custom-made transcriptional biosensors for metabolic engineering.

Koch M, Pandi A, Borkowski O, Cardoso Batista A, Faulon JL.

Curr Opin Biotechnol. 2019 Mar 25;59:78-84. doi: 10.1016/j.copbio.2019.02.016. [Epub ahead of print] Review.

 

7.

Alternative splicing events expand molecular diversity of camel CSN1S2 increasing its ability to generate potentially bioactive peptides.

Ryskaliyeva A, Henry C, Miranda G, Faye B, Konuspayeva G, Martin P.

Sci Rep. 2019 Mar 27;9(1):5243. doi: 10.1038/s41598-019-41649-5.

 

8.

Differentiation of vegetative cells into spores: a kinetic model applied to Bacillus subtilis.

Gauvry E, Mathot AG, Couvert O, Leguérinel I, Jules M, Coroller L.

Appl Environ Microbiol. 2019 Mar 22. pii: AEM.00322-19. doi: 10.1128/AEM.00322-19. [Epub ahead of print]

 

9.

Control by Metals of Staphylopine Dehydrogenase Activity during Metallophore Biosynthesis.

Hajjar C, Fanelli R, Laffont C, Brutesco C, Cullia G, Tribout M, Nurizzo D, Borezée-Durant E, Voulhoux R, Pignol D, Lavergne J, Cavelier F, Arnoux P.

J Am Chem Soc. 2019 Apr 3;141(13):5555-5562. doi: 10.1021/jacs.9b01676. Epub 2019 Mar 22.

 

10.

Procyanidin-Cell Wall Interactions within Apple Matrices Decrease the Metabolization of Procyanidins by the Human Gut Microbiota and the Anti-Inflammatory Effect of the Resulting Microbial Metabolome In Vitro.

Le Bourvellec C, Bagano Vilas Boas P, Lepercq P, Comtet-Marre S, Auffret P, Ruiz P, Bott R, Renard CMGC, Dufour C, Chatel JM, Mosoni P.

Nutrients. 2019 Mar 19;11(3). pii: E664. doi: 10.3390/nu11030664.

 

11.

Multi-hit early life adversity affects gut microbiota, brain and behavior in a sex-dependent manner.

Rincel M, Aubert P, Chevalier J, Grohard PA, Basso L, Monchaux de Oliveira C, Helbling JC, Lévy É, Chevalier G, Leboyer M, Eberl G, Layé S, Capuron L, Vergnolle N, Neunlist M, Boudin H, Lepage P, Darnaudéry M.

Brain Behav Immun. 2019 Mar 11. pii: S0889-1591(18)30570-1. doi: 10.1016/j.bbi.2019.03.006. [Epub ahead of print]

 

12.

Genetic diversity and population structure of Saccharomyces cerevisiae strains isolated from traditional alcoholic beverages of Côte d'Ivoire.

Tra Bi CY, Amoikon TLS, Kouakou CA, Noemie J, Lucas M, Grondin C, Legras JL, N'guessan FK, Djeni TN, Djè MK, Casaregola S.

Int J Food Microbiol. 2019 May 16;297:1-10. doi: 10.1016/j.ijfoodmicro.2019.03.001. Epub 2019 Mar 3.

 

13.

Genetic effects on the commensal microbiota in inflammatory bowel disease patients.

Aschard H, Laville V, Tchetgen ET, Knights D, Imhann F, Seksik P, Zaitlen N, Silverberg MS, Cosnes J, Weersma RK, Xavier R, Beaugerie L, Skurnik D, Sokol H.

PLoS Genet. 2019 Mar 8;15(3):e1008018. doi: 10.1371/journal.pgen.1008018. eCollection 2019 Mar.

 

14.

Point-of-Need DNA Testing for Detection of Foodborne Pathogenic Bacteria.

Vidic J, Vizzini P, Manzano M, Kavanaugh D, Ramarao N, Zivkovic M, Radonic V, Knezevic N, Giouroudi I, Gadjanski I.

Sensors (Basel). 2019 Mar 4;19(5). pii: E1100. doi: 10.3390/s19051100. Review.

 

15.

Fungal Species Diversity in French Bread Sourdoughs Made of Organic Wheat Flour.

Urien C, Legrand J, Montalent P, Casaregola S, Sicard D.

Front Microbiol. 2019 Feb 18;10:201. doi: 10.3389/fmicb.2019.00201. eCollection 2019.

 

16.

A putative type V pilus contributes to Bacteroides thetaiotaomicron biofilm formation capacity.

Mihajlovic J, Bechon N, Ivanova C, Chain F, Almeida A, Langella P, Beloin C, Ghigo JM.

J Bacteriol. 2019 Mar 4. pii: JB.00650-18. doi: 10.1128/JB.00650-18. [Epub ahead of print]

 

17.

The gut mycobiota: insights into analysis, environmental interactions and role in gastrointestinal diseases.

Richard ML, Sokol H.

Nat Rev Gastroenterol Hepatol. 2019 Mar 1. doi: 10.1038/s41575-019-0121-2. [Epub ahead of print] Review.

 

18.

Dietary Protein Intake Level Modulates Mucosal Healing and Mucosa-Adherent Microbiota in Mouse Model of Colitis.

Vidal-Lletjós S, Andriamihaja M, Blais A, Grauso M, Lepage P, Davila AM, Viel R, Gaudichon C, Leclerc M, Blachier F, Lan A.

Nutrients. 2019 Feb 28;11(3). pii: E514. doi: 10.3390/nu11030514.

 

19.

A Data Integration Multi-Omics Approach to Study Calorie Restriction-Induced Changes in Insulin Sensitivity.

Dao MC, Sokolovska N, Brazeilles R, Affeldt S, Pelloux V, Prifti E, Chilloux J, Verger EO, Kayser BD, Aron-Wisnewsky J, Ichou F, Pujos-Guillot E, Hoyles L, Juste C, Doré J, Dumas ME, Rizkalla SW, Holmes BA, Zucker JD, Clément K; MICRO-Obes Consortium.

Front Physiol. 2019 Feb 5;9:1958. doi: 10.3389/fphys.2018.01958. eCollection 2018.

  

21.

Ferulic Acid and Eugenol Have Different Abilities to Maintain Their Inhibitory Activity Against Listeria monocytogenes in Emulsified Systems.

Pernin A, Bosc V, Maillard MN, Dubois-Brissonnet F.

Front Microbiol. 2019 Feb 6;10:137. doi: 10.3389/fmicb.2019.00137. eCollection 2019.

 

22.

Biophysical and structural characterization of a zinc-responsive repressor of the MarR superfamily.

Varela PF, Velours C, Aumont-Niçaise M, Pineau B, Legrand P, Poquet I.

PLoS One. 2019 Feb 12;14(2):e0210123. doi: 10.1371/journal.pone.0210123. eCollection 2019.

 

23.

Bacterial NHEJ: a never ending story.

Bertrand C, Thibessard A, Bruand C, Lecointe F, Leblond P.

Mol Microbiol. 2019 Feb 12. doi: 10.1111/mmi.14218. [Epub ahead of print] Review.

 

24.

Selection of Heterologous Protein-Producing Strains in Yarrowia lipolytica.

Soudier P, Larroude M, Celińska E, Rossignol T, Nicaud JM.

Methods Mol Biol. 2019;1923:153-168. doi: 10.1007/978-1-4939-9024-5_6.

 

25.

Anti-tumoral Effects of Recombinant Lactococcus lactis Strain Secreting IL-17A Cytokine.

Jacouton E, Torres Maravilla E, Boucard AS, Pouderous N, Pessoa Vilela AP, Naas I, Chain F, Azevedo V, Langella P, Bermúdez-Humarán LG.

Front Microbiol. 2019 Jan 23;9:3355. doi: 10.3389/fmicb.2018.03355. eCollection 2018.

 

26.

Microbiota Sensing by Mincle-Syk Axis in Dendritic Cells Regulates Interleukin-17 and -22 Production and Promotes Intestinal Barrier Integrity.

Martínez-López M, Iborra S, Conde-Garrosa R, Mastrangelo A, Danne C, Mann ER, Reid DM, Gaboriau-Routhiau V, Chaparro M, Lorenzo MP, Minnerup L, Saz-Leal P, Slack E, Kemp B, Gisbert JP, Dzionek A, Robinson MJ, Rupérez FJ, Cerf-Bensussan N, Brown GD, Bernardo D, LeibundGut-Landmann S, Sancho D.

Immunity. 2019 Feb 19;50(2):446-461.e9. doi: 10.1016/j.immuni.2018.12.020. Epub 2019 Jan 29.

 

27.

Genome Sequence of the Oleaginous Yeast Yarrowia lipolytica H222.

Devillers H, Neuvéglise C.

Microbiol Resour Announc. 2019 Jan 24;8(4). pii: e01547-18. doi: 10.1128/MRA.01547-18. eCollection 2019 Jan.

 

28.

Exon junction complex components Y14 and Mago still play a role in budding yeast.

Boisramé A, Devillers H, Onésime D, Brunel F, Pouch J, Piot M, Neuvéglise C.

Sci Rep. 2019 Jan 29;9(1):849. doi: 10.1038/s41598-018-36785-3.

 

29.

MreB Forms Subdiffraction Nanofilaments during Active Growth in Bacillus subtilis.

Billaudeau C, Yao Z, Cornilleau C, Carballido-López R, Chastanet A.

MBio. 2019 Jan 29;10(1). pii: e01879-18. doi: 10.1128/mBio.01879-18.

 

30.

The main WAP isoform usually found in camel milk arises from the usage of an improbable intron cryptic splice site in the precursor to mRNA in which a GC-AG intron occurs.

Ryskaliyeva A, Henry C, Miranda G, Faye B, Konuspayeva G, Martin P.

BMC Genet. 2019 Jan 29;20(1):14. doi: 10.1186/s12863-018-0704-x.

 

31.

Risk assessment of probiotics use requires clinical parameters.

Langella P, Chatel JM.

Nat Rev Gastroenterol Hepatol. 2019 Apr;16(4):202-204. doi: 10.1038/s41575-019-0111-4. No abstract available.

 

32.

Elucidating the Immune-Related Mechanisms by Which Probiotic Strain Lactobacillus casei BL23 Displays Anti-tumoral Properties.

Jacouton E, Michel ML, Torres-Maravilla E, Chain F, Langella P, Bermúdez-Humarán LG.

Front Microbiol. 2019 Jan 11;9:3281. doi: 10.3389/fmicb.2018.03281. eCollection 2018.

 

33.

The links between the gut microbiome and non-alcoholic fatty liver disease (NAFLD).

Safari Z, Gérard P.

Cell Mol Life Sci. 2019 Apr;76(8):1541-1558. doi: 10.1007/s00018-019-03011-w. Epub 2019 Jan 25. Review.

 

34.

Identification of the novel role of butyrate as AhR ligand in human intestinal epithelial cells.

Marinelli L, Martin-Gallausiaux C, Bourhis JM, Béguet-Crespel F, Blottière HM, Lapaque N.

Sci Rep. 2019 Jan 24;9(1):643. doi: 10.1038/s41598-018-37019-2.

 

35.

Optimization of cyclopropane fatty acids production in Yarrowia lipolytica.

Czerwiec Q, Idrissitaghki A, Imatoukene N, Nonus M, Thomasset B, Nicaud JM, Rossignol T.

Yeast. 2019 Mar;36(3):143-151. doi: 10.1002/yea.3379. Epub 2019 Feb 6.

 

36.

Surface-Related Features and Virulence Among Acinetobacter baumannii Clinical Isolates Belonging to International Clones I and II.

Skerniškytė J, Krasauskas R, Péchoux C, Kulakauskas S, Armalytė J, Sužiedėlienė E.

Front Microbiol. 2019 Jan 8;9:3116. doi: 10.3389/fmicb.2018.03116. eCollection 2018.

 

37.

Biofilms in Food Processing Environments: Challenges and Opportunities.

Alvarez-Ordóñez A, Coughlan LM, Briandet R, Cotter PD.

Annu Rev Food Sci Technol. 2019 Mar 25;10:173-195. doi: 10.1146/annurev-food-032818-121805. Epub 2019 Jan 17.

 

38.

André Goffeau's imprinting on second generation yeast "genomologists".

Fairhead C, Fischer G, Liti G, Neuvéglise C, Schacherer J.

Yeast. 2019 Jan 15. doi: 10.1002/yea.3377. [Epub ahead of print]

 

39.

Genomic Sequence of the Prophage-Free Lactococcus lactis Strain IL6288.

Bolotin A, Aucouturier A, Sorokin A, Bidnenko E.

Microbiol Resour Announc. 2019 Jan 3;8(1). pii: e01545-18. doi: 10.1128/MRA.01545-18. eCollection 2019 Jan.

 

40.

Enterococcus faecalis Counter measures Defeat a Virulent Picovirinae Bacteriophage.

Lossouarn J, Briet A, Moncaut E, Furlan S, Bouteau A, Son O, Leroy M, DuBow MS, Lecointe F, Serror P, Petit MA.

Viruses. 2019 Jan 10;11(1). pii: E48. doi: 10.3390/v11010048.

 

41.

Validation of a global quantitative analysis methodology of tryptophan metabolites in mice using LC-MS.

Lefèvre A, Mavel S, Nadal-Desbarats L, Galineau L, Attucci S, Dufour D, Sokol H, Emond P.

Talanta. 2019 Apr 1;195:593-598. doi: 10.1016/j.talanta.2018.11.094. Epub 2018 Nov 27.

 

42.

Phosphatidylglycerols are induced by gut dysbiosis and inflammation, and favorably modulate adipose tissue remodeling in obesity.

Kayser BD, Lhomme M, Prifti E, Da Cunha C, Marquet F, Chain F, Naas I, Pelloux V, Dao MC, Kontush A, Rizkalla SW, Aron-Wisnewsky J, Bermúdez-Humarán LG, Oakley F, Langella P, Clément K, Dugail I.

FASEB J. 2019 Apr;33(4):4741-4754. doi: 10.1096/fj.201801897R. Epub 2019 Jan 4.

 

43.

The critical role of urease in yogurt fermentation with various combinations of Streptococcus thermophilus and Lactobacillus delbrueckii ssp. bulgaricus.

Yamauchi R, Maguin E, Horiuchi H, Hosokawa M, Sasaki Y.

J Dairy Sci. 2019 Feb;102(2):1033-1043. doi: 10.3168/jds.2018-15192. Epub 2018 Dec 26.

 

44.

High Content Screening Confocal Laser Microscopy (HCS-CLM) to Characterize Biofilm 4D Structural Dynamic of Foodborne Pathogens.

Canette A, Deschamps J, Briandet R.

Methods Mol Biol. 2019;1918:171-182. doi: 10.1007/978-1-4939-9000-9_14.

 

45.

Characterization of Bacterial Membrane Fatty Acid Profiles for Biofilm Cells.

Dubois-Brissonnet F.

Methods Mol Biol. 2019;1918:165-170. doi: 10.1007/978-1-4939-9000-9_13.

 

46.

Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli.

Jervis AJ, Carbonell P, Vinaixa M, Dunstan MS, Hollywood KA, Robinson CJ, Rattray NJW, Yan C, Swainston N, Currin A, Sung R, Toogood H, Taylor S, Faulon JL, Breitling R, Takano E, Scrutton NS.

ACS Synth Biol. 2019 Jan 18;8(1):127-136. doi: 10.1021/acssynbio.8b00398. Epub 2019 Jan 7.

 

47.

Synergistic convergence of microbiota-specific systemic IgG and secretory IgA.

Fadlallah J, Sterlin D, Fieschi C, Parizot C, Dorgham K, El Kafsi H, Autaa G, Ghillani-Dalbin P, Juste C, Lepage P, Malphettes M, Galicier L, Boutboul D, Clément K, André S, Marquet F, Tresallet C, Mathian A, Miyara M, Oksenhendler E, Amoura Z, Yssel H, Larsen M, Gorochov G.

J Allergy Clin Immunol. 2019 Apr;143(4):1575-1585.e4. doi: 10.1016/j.jaci.2018.09.036. Epub 2018 Dec 13.

 

48.

Correction: Interleukin-22-deficiency and microbiota contribute to the exacerbation of Toxoplasma gondii-induced intestinal inflammation.

Couturier-Maillard A, Froux N, Piotet-Morin J, Michaudel C, Brault L, Le Bérichel J, Sénéchal A, Robinet P, Chenuet P, Jejou S, Dumoutier L, Renauld JC, Iovanna J, Huber S, Chamaillard M, Quesniaux VFJ, Sokol H, Ryffel B.

Mucosal Immunol. 2019 Jan;12(1):290. doi: 10.1038/s41385-018-0112-6.

 

49.

Microbial impact on cholesterol and bile acid metabolism: current status and future prospects.

Kriaa A, Bourgin M, Potiron A, Mkaouar H, Jablaoui A, Gérard P, Maguin E, Rhimi M.

J Lipid Res. 2019 Feb;60(2):323-332. doi: 10.1194/jlr.R088989. Epub 2018 Nov 28. Review.

 

50.

Effect of mcl-PHA synthesis in flax on plant mechanical properties and cell wall composition.

Wróbel-Kwiatkowska M, Kropiwnicki M, Żebrowski J, Beopoulos A, Dymińska L, Hanuza J, Rymowicz W.

Transgenic Res. 2019 Feb;28(1):77-90. doi: 10.1007/s11248-018-0105-y. Epub 2018 Nov 27.

 

51.

Genetic engineering of Ehrlich pathway modulates production of higher alcohols in engineered Yarrowia lipolytica.

Celinska E, Borkowska M, Bialas W, Kubiak M, Korpys P, Archacka M, Ledesma-Amaro R, Nicaud JM.

FEMS Yeast Res. 2019 Mar 1;19(2). doi: 10.1093/femsyr/foy122.

 

52.

Diversity and enzymatic profiles of indigenous yeasts isolated from three types of palm wines produced in Côte d'Ivoire.

Amoikon TLS, Aké MDF, Djéni NT, Grondin C, Casaregola S, Djè KM.

J Appl Microbiol. 2019 Feb;126(2):567-579. doi: 10.1111/jam.14154. Epub 2018 Dec 26.

 

53.

Two alkaline motifs in the Lactobacillus salivarius Lv72 OppA surface are important to its adhesin function.

Martín C, Escobedo S, Pérez-Martínez G, Coll-Marqués JM, Martín R, Suárez JE, Quirós LM.

Benef Microbes. 2019 Feb 8;10(1):101-109. doi: 10.3920/BM2018.0052. Epub 2018 Nov 8.

 

54.

Filamentous fungi-like secretory pathway strayed in a yeast system: peculiarities of Yarrowia lipolytica secretory pathway underlying its extraordinary performance.

Celińska E, Nicaud JM.

Appl Microbiol Biotechnol. 2019 Jan;103(1):39-52. doi: 10.1007/s00253-018-9450-2. Epub 2018 Oct 23. Review.

 

55.

The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism.

Weger BD, Gobet C, Yeung J, Martin E, Jimenez S, Betrisey B, Foata F, Berger B, Balvay A, Foussier A, Charpagne A, Boizet-Bonhoure B, Chou CJ, Naef F, Gachon F.

Cell Metab. 2019 Feb 5;29(2):362-382.e8. doi: 10.1016/j.cmet.2018.09.023. Epub 2018 Oct 18.

 

56.

RetroRules: a database of reaction rules for engineering biology.

Duigou T, du Lac M, Carbonell P, Faulon JL.

Nucleic Acids Res. 2019 Jan 8;47(D1):D1229-D1235. doi: 10.1093/nar/gky940.

 

57.

Intestinal dysbiosis in inflammatory bowel disease associated with primary immunodeficiency.

Sokol H, Mahlaoui N, Aguilar C, Bach P, Join-Lambert O, Garraffo A, Seksik P, Danion F, Jegou S, Straube M, Lenoir C, Neven B, Moshous D, Blanche S, Pigneur B, Goulet O, Ruemmele F, Suarez F, Beaugerie L, Pannier S, Mazingue F, Lortholary O, Galicier L, Picard C, de Saint Basile G, Latour S, Fischer A.

J Allergy Clin Immunol. 2019 Feb;143(2):775-778.e6. doi: 10.1016/j.jaci.2018.09.021. Epub 2018 Oct 10. No abstract available.

 

58.

Sexual responses of male rats to odours from female rats in oestrus are not affected by female germ-free status.

Nielsen BL, Jérôme N, Saint-Albin A, Joly F, Rabot S, Meunier N.

Behav Brain Res. 2019 Feb 1;359:686-693. doi: 10.1016/j.bbr.2018.09.018. Epub 2018 Sep 25.

 

59.

Engineering the architecture of erythritol-inducible promoters for regulated and enhanced gene expression in Yarrowia lipolytica.

Park YK, Korpys P, Kubiak M, Celinska E, Soudier P, Trébulle P, Larroude M, Rossignol T, Nicaud JM.

FEMS Yeast Res. 2019 Jan 1;19(1). doi: 10.1093/femsyr/foy105.

 

60.

Roux-en-Y Gastric-Bypass and sleeve gastrectomy induces specific shifts of the gut microbiota without altering the metabolism of bile acids in the intestinal lumen.

Duboc H, Nguyen CC, Cavin JB, Ribeiro-Parenti L, Jarry AC, Rainteau D, Humbert L, Coffin B, Le Gall M, Bado A, Sokol H.

Int J Obes (Lond). 2019 Feb;43(2):428-431. doi: 10.1038/s41366-018-0015-3. Epub 2018 Jan 30.